| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,586,029 – 20,586,142 |
| Length | 113 |
| Max. P | 0.559199 |
| Location | 20,586,029 – 20,586,142 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.53 |
| Mean single sequence MFE | -36.14 |
| Consensus MFE | -24.12 |
| Energy contribution | -26.08 |
| Covariance contribution | 1.96 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559199 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20586029 113 + 23771897 UUAAAACUGUACCAUGGACUGGCGCACACAGUUUAAACAGAACACGCCCCCAUCGACGGCGGCGAUUUGUGCAGAAAGGC--AAAAGCCGGGCAAAAGGUCCGACCUCAAGUGGA----- ...........(((((((((.(((((((..((((.....)))).((((.((......)).))))...))))).....(((--....)))..))....)))))(....)..)))).----- ( -35.90) >DroSec_CAF1 30733 115 + 1 UUAAAACUGUACCAUGGCCUGGCGCACACAGUUUAAACAGAACACGCCCCCAUCGACGGCGGCUAUUUGUGCAGAAAGGCACAAAAGCCGGGCAAAAGGUCCGACCUCAAGUGGA----- ...........((((.(((((((((.....((((.....)))).((((.........))))))..(((((((......))))))).)))))))...(((.....)))...)))).----- ( -38.60) >DroAna_CAF1 52203 114 + 1 UUAAAACUGUACCAUGGCCUGGCGCACACAGUUUAAACAGAACACGCCCCCAUCGACGGCGGCGAUGUUCG----AA--CUCCAAAGUUUAGCCAAAGGUCCGACCUCAACUAAAAAAAA ..............(((((((((................(((((((((.((......)).)))).)))))(----((--((....))))).)))..))).)))................. ( -28.50) >DroSim_CAF1 24258 115 + 1 UUAAAACUGUACCAUGGCCUGGCGCACACAGUUUAAACAGAACACGCCCCCAUCGACGGCGGCGAUUUGUGCAGAAAGGCACAAAAGCCGGGCAAAAGGUCCGACCUCAAGUGGA----- ...........((((.(((((((.......((((.....)))).((((.((......)).)))).(((((((......))))))).)))))))...(((.....)))...)))).----- ( -40.40) >DroEre_CAF1 23813 113 + 1 UUAAAACUGUUCCAUGGCCCGGCGCACACAGUUUAAACAGAACACGCCCCCAUCGGCGGCGGCGAUUUGUGCAGAAAGGC--AAAAGCCGGCCAAAAGGCCCGACCUCAAGUGGA----- ..........(((((((((.((((((((..((((.....)))).((((.((......)).))))...))))).....(((--....))).)))....)))).(....)..)))))----- ( -37.30) >consensus UUAAAACUGUACCAUGGCCUGGCGCACACAGUUUAAACAGAACACGCCCCCAUCGACGGCGGCGAUUUGUGCAGAAAGGC_CAAAAGCCGGGCAAAAGGUCCGACCUCAAGUGGA_____ ...........((((.((((((((((((..((((.....)))).((((.((......)).))))...))))).(.....)......)))))))...(((.....)))...))))...... (-24.12 = -26.08 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:48 2006