Locus 7685

Sequence ID 3L_DroMel_CAF1
Location 20,585,570 – 20,585,674
Length 104
Max. P 0.543069
window12489

overview

Window 9

Location 20,585,570 – 20,585,674
Length 104
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.16
Mean single sequence MFE -25.48
Consensus MFE -11.12
Energy contribution -11.64
Covariance contribution 0.52
Combinations/Pair 1.25
Mean z-score -1.77
Structure conservation index 0.44
SVM decision value 0.02
SVM RNA-class probability 0.543069
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20585570 104 - 23771897
CAGCUCGUCGAGUGUGCAUUCAGAUCCAGUUGUGAAUGCAACCUAACAGGUGUU----UCCCAC------------CCCAUUUCCACUCCACUUUCCAACACUUUGGCCACCAGAGCUAC
.(((((((.(((((((((((((.(......).))))))))........((((..----...)))------------).......))))).))...((((....))))......))))).. ( -31.60)
>DroSec_CAF1 30274 104 - 1
CAGAUCGUCGAGUAUGCAUCCAGAUCCACUUGUGAAUGCCCCCUAACAAGUGUU----CCCCUC------------CCCAUUUCCACUCCAUUUUCCAACACUUUGGCCACCAGAGCUAC
..((((...((.......))..))))(((((((............)))))))..----......------------.........................((((((...)))))).... ( -15.10)
>DroAna_CAF1 51749 120 - 1
CGGCUCAUUUAGGGUCGAUGGAGAUCCAUUUGGGAAUAUUUGAGAACAGGUGCUGCUGCCCCUGCCCAUCUGCCCAUCCACUUGCAGUCCAAUUUCCAACACUUUACCCAUUCGAGCUAC
.(((((.....((((.(((((....)))))(((((((......(..((((.((....)).))))..)..((((..........))))....))))))).......))))....))))).. ( -32.80)
>DroSim_CAF1 23801 104 - 1
CAGCUCGUCGAGUGUGCAUCCAGAUCCACUUGUGAAUGCCCCCUAACAAGUGUU----CCCCAC------------CCCAUUUCCACUCCACUUUCCAACACUUUGGCCACCAGAGCUAC
.(((((((.(((((.((((.((.(......).)).))))..........(((..----...)))------------........))))).))...((((....))))......))))).. ( -22.10)
>DroEre_CAF1 23324 108 - 1
CAGCUCGUCGAGCGUGCAUCUAGAUCCAC-UGCGAGUGCUUCCUAGCAGGUGUU----CCCAGC-CCAAU------CCCAAUUCCACUCCAGCUUCCAACACUUUGGCCAGCCGAGCUAC
.((((((.((((((((.((....)).)))-((.(((((((....))).((.((.----....))-))...------.........))))))))))((((....))))...).)))))).. ( -25.80)
>consensus
CAGCUCGUCGAGUGUGCAUCCAGAUCCACUUGUGAAUGCCCCCUAACAGGUGUU____CCCCAC____________CCCAUUUCCACUCCACUUUCCAACACUUUGGCCACCAGAGCUAC
.(((((....................(((((((............)))))))...........................................((((....))))......))))).. (-11.12 = -11.64 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:47 2006