Locus 7684

Sequence ID 3L_DroMel_CAF1
Location 20,584,895 – 20,584,998
Length 103
Max. P 0.931171
window12488

overview

Window 8

Location 20,584,895 – 20,584,998
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.98
Mean single sequence MFE -15.14
Consensus MFE -13.02
Energy contribution -13.22
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.86
SVM decision value 1.21
SVM RNA-class probability 0.931171
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20584895 103 - 23771897
-----------------CGACUGAAAUGUUGAACAUUUUAAACCAUAACAUUUUAUUAACAUAAUAAAAUCAAAAUUAUCAACAAAGUCGUCAAUGUCGCGACACAAAACUGGGACCUAC
-----------------....(((((((.....)))))))..(((....(((((((((...)))))))))................(((((.......))))).......)))....... ( -14.50)
>DroSec_CAF1 29578 103 - 1
-----------------UGACUGAAAUGUUGAACAUUUUAAACCAUAACAUUUUAUUAACAUAAUAAAAUCAAAAUUAUCAACAAAGUCGUCAAUGUCGCGACACAAAACUGGGACCCAC
-----------------....(((((((.....)))))))..(((....(((((((((...)))))))))................(((((.......))))).......)))....... ( -14.50)
>DroAna_CAF1 51012 117 - 1
CAGCCGACCCGACUGACUGACUGAAAUGUUGAACAUUUUAAACCAUAACAUUUUAUUAACAUAAUAAAAUCAAAAUUAUCAACAAAGUCGUCAAUGUCGCGACACAA-ACUGAGACA--C
.......(.((((((((.((((....((((((..(((((..........(((((((((...))))))))).)))))..)))))).))))))))..)))).)......-.........--. ( -18.50)
>DroSim_CAF1 23124 103 - 1
-----------------UGACUGAAAUGUUGAACAUUUUAAACCAUAACAUUUUAUUAACAUAAUAAAAUCAAAAUUAUCAACAAAGUCGUCAAUGUCGCGACACAAAACUGGGACCCAC
-----------------....(((((((.....)))))))..(((....(((((((((...)))))))))................(((((.......))))).......)))....... ( -14.50)
>DroEre_CAF1 22688 103 - 1
-----------------UGACUGAAAUGCUGAACAUUUUAAACCAUAACAUUUUAUUAACAUAAUAAAAUCAAAAUUAUCAACAAAGUCGUCAAUGUCGCGACACAAAACUGGGACCCAC
-----------------....(((((((.....)))))))..(((....(((((((((...)))))))))................(((((.......))))).......)))....... ( -13.70)
>consensus
_________________UGACUGAAAUGUUGAACAUUUUAAACCAUAACAUUUUAUUAACAUAAUAAAAUCAAAAUUAUCAACAAAGUCGUCAAUGUCGCGACACAAAACUGGGACCCAC
.....................(((((((.....)))))))..(((....(((((((((...)))))))))................(((((.......))))).......)))....... (-13.02 = -13.22 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:46 2006