Locus 7683

Sequence ID 3L_DroMel_CAF1
Location 20,584,658 – 20,584,760
Length 102
Max. P 0.520383
window12487

overview

Window 7

Location 20,584,658 – 20,584,760
Length 102
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 75.56
Mean single sequence MFE -31.77
Consensus MFE -16.20
Energy contribution -16.70
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.96
Structure conservation index 0.51
SVM decision value -0.03
SVM RNA-class probability 0.520383
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20584658 102 - 23771897
GGCAUCGCUUC----------UGGAGAUGGUCACAUCACGUGAGUGGGUCAAUGGGAAUCACGAUUGUCCCGUGA-UCGGAAGGAUCGUGGCAUUUAGUAACUGAAUGCAAAU
.(((((.((((----------(((.((((....))))((....))(((.((((.(......).)))).)))....-)))))))))).)).((((((((...)))))))).... ( -36.00)
>DroSec_CAF1 29354 87 - 1
GGCAUCGCUUG----------UGGAGAUGGUCACAUCACGUGAGUGGGUCAAUGGGAAUCACGAAUGUUCCGUGA-UCGGAAGGAC--UAGCAUUGA-------------AAU
.((..((((..----------((..((((....)))).))..))))((((.......((((((.......)))))-)(....))))--).)).....-------------... ( -26.40)
>DroSim_CAF1 22886 100 - 1
GGCAUCGCUUC----------UGGAGAUGGUCACAUCACGUGAGUGGGUCAAUCGAACUCACGAAUGUUCCGUGA-UCGGAAGGAC--UAGCAUUGAAUAACUAAAUGCAAAU
....((.((((----------(((..((((..((((..(((((((..(.....)..))))))).)))).))))..-))))))))).--..(((((.........))))).... ( -29.60)
>DroEre_CAF1 22461 98 - 1
GGCAUCGCUGCUCGGUUUCCUUGGAGAUGGUCACAUCACGUGAGUGGGGCAAUGGGACUCACGAAUGUCACGUGAGUCUACAGUAC--UAGCCUUUC-------------AAA
(((..((.(((((.(((((....)))))........(((....)))))))).))(((((((((.......))))))))).......--..)))....-------------... ( -35.10)
>consensus
GGCAUCGCUUC__________UGGAGAUGGUCACAUCACGUGAGUGGGUCAAUGGGAAUCACGAAUGUCCCGUGA_UCGGAAGGAC__UAGCAUUGA_____________AAU
.((.((((.................((((....)))).(((((((...........)))))))........))))..(....).......))..................... (-16.20 = -16.70 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:45 2006