Locus 7681

Sequence ID 3L_DroMel_CAF1
Location 20,583,792 – 20,583,910
Length 118
Max. P 0.508375
window12483

overview

Window 3

Location 20,583,792 – 20,583,910
Length 118
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 87.83
Mean single sequence MFE -24.76
Consensus MFE -16.64
Energy contribution -17.82
Covariance contribution 1.19
Combinations/Pair 1.10
Mean z-score -1.58
Structure conservation index 0.67
SVM decision value -0.05
SVM RNA-class probability 0.508375
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20583792 118 + 23771897
UCCCGAAAGUUGCUCUCCUUUUCGAACGGAAUUCGAUUGCUAUCUUUUAUAAUAAUGUAUAGUAAUAUAUCUUAUUGGGGAAAGGGAGCAUAUUCUAAUUUACCAAGGACACGGACUU
..(((.....(((((.(((((((...........(((....))).....((((((.(((((....))))).)))))).))))))))))))..((((.........))))..))).... ( -26.70)
>DroSec_CAF1 28510 112 + 1
UCCCGAAAGUUGCUCUCCUUUUCGAUCGGAAUUCGAUCGUUAUCUUUUAUAAUAAUGU----UCAUAUAUCUUAUUGGGGAAAGGGAGCAUAUUCUAAUUUUCCAAGGAUAC--AUUU
(((.(((((((((((.((((((((((((.....)))))...........((((((.((----......)).)))))).)))))))))))).......))))))...)))...--.... ( -27.11)
>DroSim_CAF1 22043 112 + 1
UCCCGAAAGUUGCUCUCCUUUUCGAUCGGAAUUCGAUCGCUAUCUUUUAUAAUAAUGU----UCAUAUAUCUUAUUGGGGAAAGGGAGCAUAUUCUAAUUUUCCAAGGAUAC--AUUU
(((.(((((((((((.((((((((((((.....)))))...........((((((.((----......)).)))))).)))))))))))).......))))))...)))...--.... ( -27.11)
>DroEre_CAF1 21634 110 + 1
UCUCCAAAGUUGCUCUCCUUUUCGAACGGAAUGCGAUCGCUAUCUUUUAUAAUAAUGC----UCAUAUAUAUUUUUAGGGAAAG--CGCAAAUCCUAGUCUCCCAAGGAUAC--AUUU
........(((((..(((.........)))..)))))((((.(((((...((((....----.......))))...))))).))--))...(((((.(.....).)))))..--.... ( -18.10)
>consensus
UCCCGAAAGUUGCUCUCCUUUUCGAACGGAAUUCGAUCGCUAUCUUUUAUAAUAAUGU____UCAUAUAUCUUAUUGGGGAAAGGGAGCAUAUUCUAAUUUUCCAAGGAUAC__AUUU
((((....).(((((.((((((((((((.....))))).....((..((..((((((......))).)))..))..))))))))))))))................)))......... (-16.64 = -17.82 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:41 2006