Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,583,598 – 20,583,753 |
Length | 155 |
Max. P | 0.839234 |
Location | 20,583,598 – 20,583,716 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.96 |
Mean single sequence MFE | -34.44 |
Consensus MFE | -33.46 |
Energy contribution | -33.30 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.13 |
Mean z-score | -1.22 |
Structure conservation index | 0.97 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.839234 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20583598 118 + 23771897 GUAAUUUCUGCAUGUUGUUUAUGGGCCUCGCAACGCUCUCAACGGGGGGAUGAGUUCGAC--UCGGACUCGAGUUCAUAAUAAAAUUUAUGAGCAAUGCCCUGUUUUGGAAUUGAGCAAA .(((((((.((.(((((.....((((........)))).)))))((((.(((((((((..--.)))))))..((((((((......)))))))).)).))))))...)))))))...... ( -35.40) >DroSec_CAF1 28313 118 + 1 GUAAUUUCUGCAUGUUGUUUAUGGGCCUCGCAACGCUCUCAACGGGGGGAUGAGUUCGAC--UGGGACUCGAGUUCAUAAUAAAAUUUAUGAGCAAUGCCCUGUUUUGGAAUUGAGCAAA .(((((((.((.(((((.....((((........)))).)))))((((.((((((((...--..))))))..((((((((......)))))))).)).))))))...)))))))...... ( -34.70) >DroAna_CAF1 49735 120 + 1 GUAAUUUCUGCAUGUUGUUUAUGAGCCUCGCAACGCUCUCGACGGGGGGAUGAGUUCGGCUCUCGGGUUCGAGUUCAUAAUAAAAUUUAUGAGCAAUGCCCUGUUUUGGAAUUGAGCAAA .(((((((.(((..........(((((..((....(((((....)))))....))..)))))..((((....((((((((......))))))))...)))))))...)))))))...... ( -34.70) >DroSim_CAF1 21847 118 + 1 GUAAUUUCUGCAUGUUGUUUAUGGGCCUCGCAACGCUCUCAACGGGGGGAUGAGUUCGAC--UGGGACUCGAGUUCAUAAUAAAAUUUAUGAGCAAUGCCCUGUUUUGGAAUUGAGCAAA .(((((((.((.(((((.....((((........)))).)))))((((.((((((((...--..))))))..((((((((......)))))))).)).))))))...)))))))...... ( -34.70) >DroEre_CAF1 21441 118 + 1 GUAAUUUCUGCAUGUUGUUUAUGGGCCUCGCAACGCUCUCAACGGGGGGAUGAGUUCGCC--UCGGCCUCGAGUUCAUAAUAAAAUUUAUGAGCAAUGCCCUGUUUUGGAAAUAAGCAAA (((.....)))...((((((((((((........))))..(((((((.(.((((..((..--.))..)))).((((((((......))))))))..).)))))))......)))))))). ( -32.70) >consensus GUAAUUUCUGCAUGUUGUUUAUGGGCCUCGCAACGCUCUCAACGGGGGGAUGAGUUCGAC__UCGGACUCGAGUUCAUAAUAAAAUUUAUGAGCAAUGCCCUGUUUUGGAAUUGAGCAAA (((.....)))...(((((((.((((........))))..(((((((.(.((((((((.....)))))))).((((((((......))))))))..).))))))).......))))))). (-33.46 = -33.30 + -0.16)
Location | 20,583,638 – 20,583,753 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.33 |
Mean single sequence MFE | -33.36 |
Consensus MFE | -24.46 |
Energy contribution | -24.62 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.12 |
Mean z-score | -1.84 |
Structure conservation index | 0.73 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.705360 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20583638 115 + 23771897 AACGGGGGGAUGAGUUCGAC--UCGGACUCGAGUUCAUAAUAAAAUUUAUGAGCAAUGCCCUGUUUUGGAAUUGAGCAAAUCAAAAAAGGAAGGGGCCCACUGAG---GAGGCACAUGUG ..(((.((..((((((((..--.)))))))).((((((((......))))))))...(((((.((((....((((.....))))...)))).))))))).)))..---............ ( -32.80) >DroSec_CAF1 28353 118 + 1 AACGGGGGGAUGAGUUCGAC--UGGGACUCGAGUUCAUAAUAAAAUUUAUGAGCAAUGCCCUGUUUUGGAAUUGAGCAAAUCAAAAAAGGAAGGGGCCCACUGCGGCGGAGUCACAUGUG ..((.((((.(((((((...--..))))))).((((((((......))))))))...(((((.((((....((((.....))))...)))).))))))).)).))............... ( -34.00) >DroAna_CAF1 49775 116 + 1 GACGGGGGGAUGAGUUCGGCUCUCGGGUUCGAGUUCAUAAUAAAAUUUAUGAGCAAUGCCCUGUUUUGGAAUUGAGCAAAUCAAAAGACCUGGAUAUA-AAA---AAGGAGUCACAUGUG (((.((((.(((((..((.....))..)))..((((((((......)))))))).)).))))(((..((..((((.....))))....))..)))...-...---.....)))....... ( -28.60) >DroSim_CAF1 21887 117 + 1 AACGGGGGGAUGAGUUCGAC--UGGGACUCGAGUUCAUAAUAAAAUUUAUGAGCAAUGCCCUGUUUUGGAAUUGAGCAAAUCAAA-AAGGAAGGGGCCCACUGCGGCGGAGUCACAUGUG ..((.((((.(((((((...--..))))))).((((((((......))))))))...(((((.((((....((((.....)))).-.)))).))))))).)).))............... ( -33.70) >DroEre_CAF1 21481 114 + 1 AACGGGGGGAUGAGUUCGCC--UCGGCCUCGAGUUCAUAAUAAAAUUUAUGAGCAAUGCCCUGUUUUGGAAAUAAGCAAAUCAAAAAAGGAAGGGGCC-ACA---AAGGAGGCACAUGUG ..(((((.((.....)).))--)))(((((..((((((((......))))))))...(((((.((((((...........))))))......))))).-...---...)))))....... ( -37.70) >consensus AACGGGGGGAUGAGUUCGAC__UCGGACUCGAGUUCAUAAUAAAAUUUAUGAGCAAUGCCCUGUUUUGGAAUUGAGCAAAUCAAAAAAGGAAGGGGCCCACUG_GAAGGAGUCACAUGUG (((((((.(.((((((((.....)))))))).((((((((......))))))))..).)))))))....................................................... (-24.46 = -24.62 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:40 2006