Locus 7679

Sequence ID 3L_DroMel_CAF1
Location 20,583,052 – 20,583,170
Length 118
Max. P 0.601150
window12480

overview

Window 0

Location 20,583,052 – 20,583,170
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.09
Mean single sequence MFE -31.97
Consensus MFE -18.88
Energy contribution -20.44
Covariance contribution 1.56
Combinations/Pair 1.20
Mean z-score -2.31
Structure conservation index 0.59
SVM decision value 0.14
SVM RNA-class probability 0.601150
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20583052 118 - 23771897
CCCUCAACUUAAGUGCAUAAUUUAUAACGAAGUCCGGCGCGCAAGCGCAGACAAAGCUGGCAAAAUCUGGCAAG-AUUGUUGGAGCUCCAGGUUAUACACUCACAAAAAAAAAA-GGAAA
.(((........(((.......((((((...(((..((((....)))).)))....((((.....((..(((..-..)))..))...))))))))))....))).........)-))... ( -30.93)
>DroSec_CAF1 27766 119 - 1
CCCUCAACUUAAGUGCAUAAUUUAUAACGAAGACCGGCGCGCAAGCGCAGACAAAGCUGGCAAAAUCUGGCAAG-AUUGUUGGAGCUCCAGGUUAUACACUCAGGAAAAAAAAAGGGGAC
((((...(((.((((.(((((...............((((....))))........((((.....((..(((..-..)))..))...))))))))).)))).)))........))))... ( -32.40)
>DroAna_CAF1 49123 115 - 1
CCCUCAACUUAAGUGCAUAAUUUAUAACGAAGUCCGGCGAGCAAGCGCAGACAAAGCUGGUAAAAU--GCCAACAAUCCCUGAAGCUUUACCCUCCACACUUAAAAAAAUACAA-G--CC
........(((((((................(((..(((......))).)))(((((((((.....--)))..((.....)).))))))........)))))))..........-.--.. ( -19.60)
>DroSim_CAF1 21303 116 - 1
CCCUCAACUUAAGUGCAUAAUUUAUAACGAAGUCCGGCGCGCAGGCGCAGACAAAGCUGGCAAAAUCUGGCAAG-AUUGUUGGAGCUCCAGGUUAUACACUCAGGAAAAAAA---GGGAC
((((...(((.((((.(((((..........(((..((((....)))).)))....((((.....((..(((..-..)))..))...))))))))).)))).)))......)---))).. ( -33.00)
>DroEre_CAF1 20891 113 - 1
CCCUCAACUUAAGUGCAUAAUUUAUAACGAAGUCCGGCGCGCAAGCGCAGACAAAGCUG-CAAAAUGUGGCAAG-AUUGUUGGAGCUCCGAGUUGUGCACUCGGAAA--AA--A-GGGGC
((((....(..((((((((((((..(((((.(((..((((....)))).)))...((..-(.....)..))...-.)))))((....))))))))))))))..)...--..--)-))).. ( -43.90)
>consensus
CCCUCAACUUAAGUGCAUAAUUUAUAACGAAGUCCGGCGCGCAAGCGCAGACAAAGCUGGCAAAAUCUGGCAAG_AUUGUUGGAGCUCCAGGUUAUACACUCAGAAAAAAAAAA_GGGAC
...........((((.(((((((..(((((.(((..((((....)))).)))...(((((......))))).....)))))((....))))))))).))))................... (-18.88 = -20.44 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:38 2006