| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,582,344 – 20,582,502 |
| Length | 158 |
| Max. P | 0.869305 |
| Location | 20,582,344 – 20,582,462 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.08 |
| Mean single sequence MFE | -28.08 |
| Consensus MFE | -10.97 |
| Energy contribution | -16.25 |
| Covariance contribution | 5.28 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.869305 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20582344 118 + 23771897 A-AUAAAAUUUGACAUAAAUUGCCGUUUGACUUCGCUGCCCCUCCUACUGGGAACAUUUUGCAGUCUUUUUGGCAUCUCAAACAUUUGUGCGAAUUGCCCAAGAAAUUGCGGCAAUUC-G .-...........(((((((....((((((....(.((((......((((.((.....)).))))......)))).))))))))))))))((((((((((((....))).))))))))-) ( -33.00) >DroSec_CAF1 27015 118 + 1 A-AUAAAAUUUGACAUAAAUUGCCGUUUGACUUUGCUGCCCCUCCUACUGGGAACAUUUCGCAGUCGUUUUGGCAUCUCAAACAUUUGUGCGAAUUGCCCAAGAAAUUGCCGCAAUUC-G .-...........((((((((((((...(((...((((((((.......)))........))))).))).)))))........)))))))((((((((.(((....)))..)))))))-) ( -29.70) >DroAna_CAF1 48469 92 + 1 AUAUAAAAUUUGACACAAAUUAUUUCUUUCUCGAGCCACCACGCCCCCUUG----------------------------ACACAUUUUCGCAAAUUAUCCAAGAAAUGGUGGCAAUUUUU ......((((((...)))))).............(((((((......((((----------------------------....((((....))))....))))...)))))))....... ( -13.90) >DroSim_CAF1 20552 118 + 1 A-AUAAAAUUUGACAUAAAUUGCCAUUUGACUUCGCUGCCCCUCCUACUGGGAACAUUUUGCAGUCGUUUUGGCAUCUCAAACAUUUGUGCGAAUUGCCCAAGAAAUUGCCGCAAUUC-G .-...........((((((((((((...(((...((((((((.......)))........))))).))).)))))........)))))))((((((((.(((....)))..)))))))-) ( -30.40) >DroEre_CAF1 20179 118 + 1 A-AUAAAAUGUGACAUAAAUUGCCGUUUGCCUGCGCGGCCCCUCCUACGGGUCACAUUUUCCGGUCGUUUUGGCCUCCCAAACAUUUGUGCGAAUUGCCCAAGAAAUUGCGGCACUUU-C .-..((((((((((.......(((((........))))).((......))))))))))))..((((.....))))................(((.(((((((....))).))))..))-) ( -33.40) >consensus A_AUAAAAUUUGACAUAAAUUGCCGUUUGACUUCGCUGCCCCUCCUACUGGGAACAUUUUGCAGUCGUUUUGGCAUCUCAAACAUUUGUGCGAAUUGCCCAAGAAAUUGCGGCAAUUC_G ...........(.((((((((((((..(((((......(((........)))..........)))))...)))))........))))))))(((((((((((....))).)))))))).. (-10.97 = -16.25 + 5.28)
| Location | 20,582,383 – 20,582,502 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 91.04 |
| Mean single sequence MFE | -33.75 |
| Consensus MFE | -24.05 |
| Energy contribution | -27.68 |
| Covariance contribution | 3.63 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20582383 119 + 23771897 CCUCCUACUGGGAACAUUUUGCAGUCUUUUUGGCAUCUCAAACAUUUGUGCGAAUUGCCCAAGAAAUUGCGGCAAUUCGGGCUUGAAUAGUUUGUGAAUCCCUGUGUCCUUUUCGAUAU .....(((.((((..........(((.....))).((.(((((((((((.((((((((((((....))).))))))))).))..)))).))))).)).)))).)))............. ( -38.00) >DroSec_CAF1 27054 119 + 1 CCUCCUACUGGGAACAUUUCGCAGUCGUUUUGGCAUCUCAAACAUUUGUGCGAAUUGCCCAAGAAAUUGCCGCAAUUCGGGCUUGAAUAGUUUGUGAAUCCCUGUGUCCUUUUCGAUAU .....(((.((((..........(((.....))).((.(((((((((((.((((((((.(((....)))..)))))))).))..)))).))))).)).)))).)))............. ( -31.80) >DroSim_CAF1 20591 119 + 1 CCUCCUACUGGGAACAUUUUGCAGUCGUUUUGGCAUCUCAAACAUUUGUGCGAAUUGCCCAAGAAAUUGCCGCAAUUCGGGCUUGAAUAGUUUGUGAAUCCCUGUGUCCUUUUCGAUAU .....(((.((((..........(((.....))).((.(((((((((((.((((((((.(((....)))..)))))))).))..)))).))))).)).)))).)))............. ( -31.80) >DroEre_CAF1 20218 118 + 1 CCUCCUACGGGUCACAUUUUCCGGUCGUUUUGGCCUCCCAAACAUUUGUGCGAAUUGCCCAAGAAAUUGCGGCACUUUCGGC-UGAAUAGCUUGCGCAUCCUUGUGUCCGCUUCGAUGU .......((((.((((......((((.....))))...........((((((((.(((((((....))).))))..)))(((-(....)))).)))))....))))))))......... ( -33.40) >consensus CCUCCUACUGGGAACAUUUUGCAGUCGUUUUGGCAUCUCAAACAUUUGUGCGAAUUGCCCAAGAAAUUGCCGCAAUUCGGGCUUGAAUAGUUUGUGAAUCCCUGUGUCCUUUUCGAUAU .....(((.((((..........(((.....))).((.(((((((((((.((((((((((((....))).))))))))).))..)))).))))).)).)))).)))............. (-24.05 = -27.68 + 3.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:37 2006