Locus 7676

Sequence ID 3L_DroMel_CAF1
Location 20,580,764 – 20,580,879
Length 115
Max. P 0.758204
window12473

overview

Window 3

Location 20,580,764 – 20,580,879
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.95
Mean single sequence MFE -19.95
Consensus MFE -15.96
Energy contribution -15.32
Covariance contribution -0.64
Combinations/Pair 1.25
Mean z-score -1.62
Structure conservation index 0.80
SVM decision value 0.49
SVM RNA-class probability 0.758204
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20580764 115 - 23771897
AAAAACGAGUACGAAUCCGCUUGCAAAAUUAUUUAAAUUUUGAAAUGUCCGA-AACGAGCAGCAAGUGCAUUUGAAAGCGAUAACAAAACAACACAC----ACGUCAAACAAUACACAGA
.....((..(.(((((.(((((((((((((.....))))))....((..((.-..))..))))))))).))))).)..)).................----................... ( -18.20)
>DroSec_CAF1 25465 114 - 1
A-AAACGAGUACGAAUCCGCUUGCAAAAUUAUUCAAAUUUUGAAAUGUCCGA-AACGAGCAGCAAGUGCAUUUGAAAGCGAUAACAAAACGACACAC----ACGUCAAACAAUAAACAGA
.-...((..(.(((((.(((((((.......((((.....)))).((..((.-..))..))))))))).))))).)..))..........(((....----..))).............. ( -21.50)
>DroAna_CAF1 46921 116 - 1
A-AAACGAGUACGAAUCCGUGUGCAAAAUUAUUCAAAUUUUGAAACAUCUGAAAACGAGCAGCAAGUGCAUUUGAAAGCGAUAACAA-ACAACACACACGCACGUCAAAUGGCA--GCGA
.-......((.((..((.((((.(((((((.....)))))))..))))..))...)).)).((...(((((((((..(((.......-..........)))...)))))).)))--)).. ( -17.73)
>DroSim_CAF1 19033 114 - 1
A-AAACGAGUACGAAUCCGCUUGCAAAAUUAUUCAAAUUUUGAAAUGUCCGA-AACGAGCAGCAAGUGCAUUUGAAAGCGAUAACAAAACGACACAC----ACGUCAAACAAUAAACAGA
.-...((..(.(((((.(((((((.......((((.....)))).((..((.-..))..))))))))).))))).)..))..........(((....----..))).............. ( -21.50)
>DroEre_CAF1 18657 112 - 1
A-AAACGAGUACGAGUCCGCUUGCAAAAUUAUUCAGAUUUUGAAACGCCUGA-AACGAGCAGCAAGUGCAUUUGAAAGCGAUAACAAAACGACACAC----ACGUCAAACAAUAAACA--
.-...((..(.(((((.(((((((.......(((((............))))-).......))))))).))))).)..))..........(((....----..)))............-- ( -20.84)
>consensus
A_AAACGAGUACGAAUCCGCUUGCAAAAUUAUUCAAAUUUUGAAAUGUCCGA_AACGAGCAGCAAGUGCAUUUGAAAGCGAUAACAAAACGACACAC____ACGUCAAACAAUAAACAGA
.....((..(.(((((.(((((((.......(((((...)))))..((.((....)).)).))))))).))))).)..))........................................ (-15.96 = -15.32 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:25 2006