Locus 7674

Sequence ID 3L_DroMel_CAF1
Location 20,579,291 – 20,579,403
Length 112
Max. P 0.575462
window12471

overview

Window 1

Location 20,579,291 – 20,579,403
Length 112
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 86.31
Mean single sequence MFE -26.15
Consensus MFE -16.94
Energy contribution -18.12
Covariance contribution 1.19
Combinations/Pair 1.07
Mean z-score -1.77
Structure conservation index 0.65
SVM decision value 0.08
SVM RNA-class probability 0.575462
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20579291 112 + 23771897
AUUGGGAAUUUGGUGUCUUUUGCUCAUCGAUUUCGUUUUGAUUUAUUAUCGUAACGUAAAUCCCAUCGUGGACUACGGGUAUACAAUCUGGUGAGAAAUCCUAAUUCCUUUC
...(((((((.((.....(((.(((((((((((((((.((((.....)))).)))).))))).....(((..(....)...))).....))))))))).)).)))))))... ( -28.40)
>DroSec_CAF1 24023 112 + 1
AUUGGGAAUUUGGUGUCUUUUGCUCAUCGAUUUCGUUUUGAUUUAUUAUCCUAUCGUAAAUCGCAUCGUGGACUACGGGCAUACAAUCUGGUGAGAAAUCCUAAUUCCUUUC
...(((((((.((.....(((.(((((((((((((....(((.....)))....)).)))))((.(((((...))))))).........))))))))).)).)))))))... ( -26.40)
>DroSim_CAF1 17552 112 + 1
AUUGGGAAUUUGGUGUCUUUUGCUCAUCGAUUUCGUUUUGAUUUAUUAUCCUAUCGUAAAUCGCAUCGCGGACAACGGGCAUACAAUCUGGUGAGAAAUCCUAAUUCCUUUC
...(((((((.((.....(((.(((((((((((((....(((.....)))....)).)))))((.(((.......))))).........))))))))).)).)))))))... ( -24.60)
>DroEre_CAF1 17297 92 + 1
ACUGGGAAUUUGGAUUCUUUUGCUCAUCGACUGCGUUUUGAUUUAUUAUCGUAUCGUAAAUCGCAUCGUGGA--------------------GAGAAAUCCUAAUUCCUUUC
...(((((((.((((((((((...((.(((.((((.((((...(((....)))...)))).)))))))))))--------------------))).))))).)))))))... ( -25.20)
>consensus
AUUGGGAAUUUGGUGUCUUUUGCUCAUCGAUUUCGUUUUGAUUUAUUAUCCUAUCGUAAAUCGCAUCGUGGACUACGGGCAUACAAUCUGGUGAGAAAUCCUAAUUCCUUUC
...(((((((.((..((((.(((((.....(..((...((((((((.........))))))))...))..).....)))))...........))))...)).)))))))... (-16.94 = -18.12 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:23 2006