Locus 7673

Sequence ID 3L_DroMel_CAF1
Location 20,579,028 – 20,579,144
Length 116
Max. P 0.750523
window12470

overview

Window 0

Location 20,579,028 – 20,579,144
Length 116
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 98.28
Mean single sequence MFE -37.57
Consensus MFE -37.39
Energy contribution -37.50
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.64
Structure conservation index 1.00
SVM decision value 0.47
SVM RNA-class probability 0.750523
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20579028 116 - 23771897
CUCCAAUUUAUGAUCGACUCGGGAGUGGAGGACUUCGCUCGCAGGAAAGACAAAGAGUGUUGCCCUAACAAUGGCAAGUCCUUUCUGUCUGUGCCUCCCCGCUCCUUCGGCAUCAU
.........(((.((((...((((((((.(((...(((..(((((((.(((........(((((........)))))))).)))))))..)))..))))))))))))))))))... ( -39.40)
>DroSec_CAF1 23766 116 - 1
CUCCAAUUUAUGAUCGACUCAGGAGUGGAGGACUUCGCUCGCAGGAAAGACAAUGAGUGUUGCCCUAACAAUGGCAAGUCCUUUCUGUCUGUGCCUCCCCGCUCCUUCGGCAUCAU
.........(((.((((...((((((((.(((...(((..(((((((.(((........(((((........)))))))).)))))))..)))..))))))))))))))))))... ( -39.40)
>DroSim_CAF1 17295 116 - 1
CUCCAAUUUAUGAUCGACUCGGGAGUGGAGGACUUCGCUCGCAGGAAAGACAAAGAGUGUUGCCCUAACAAUGGCAAGUCCUUUCUGUCUGUGCCUCCCCGCUACUUCGGCAUCAU
.........(((((.(.((..(((((((.(((...(((..(((((((.(((........(((((........)))))))).)))))))..)))..)))))))).))..)))))))) ( -33.90)
>consensus
CUCCAAUUUAUGAUCGACUCGGGAGUGGAGGACUUCGCUCGCAGGAAAGACAAAGAGUGUUGCCCUAACAAUGGCAAGUCCUUUCUGUCUGUGCCUCCCCGCUCCUUCGGCAUCAU
.........(((.((((...((((((((.(((...(((..(((((((.(((........(((((........)))))))).)))))))..)))..))))))))))))))))))... (-37.39 = -37.50 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:22 2006