| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,577,765 – 20,577,884 |
| Length | 119 |
| Max. P | 0.586387 |
| Location | 20,577,765 – 20,577,884 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.95 |
| Mean single sequence MFE | -27.80 |
| Consensus MFE | -22.18 |
| Energy contribution | -22.66 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.586387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20577765 119 - 23771897 CAUUAUUGUCU-GAAAUAGAAAGGGUUCCCUGGGAUAACUUGAUUAGACGCAACAUUCCGUUUGCUCCUUUGGCGAACAUUAUUCUUGAUUAAGUCACAUUAAUUAUGAUAAUGAUGGCC ((((((((((.-.....(((((((....)))(((((...(((........))).)))))(((((((.....)))))))....))))(((((((......))))))).))))))))))... ( -27.90) >DroSec_CAF1 22521 119 - 1 CAUUAUUGUCU-GGAAUAGAAAGGGUUCCCUGGGAUAACUUGAUUAGACGCAACAUUCCGUAUGCUCCUUCGGCGAACAUUAUUCUUGAUUAAGUCACAUUAAUUAUGAUAAUGAUGGCC ((((((((((.-(((((((.....((((((.((((...((.....))..(((((.....)).)))))))..)).)))).)))))))(((((((......))))))).))))))))))... ( -27.60) >DroAna_CAF1 44153 119 - 1 CAUUAUUGUCUUGUAGGAAAAAGGGUUCCCUGGGAUAACUUUAUUAGGAGCAAAAUUCCGUUUGUUUCUUAAGCGAACAUUAUUCUUGAUUAAGUCACAUUAAUUAUGAUAAUGAUG-CC ((((((((((.....((((.....(((((....((((....)))).)))))....))))(((((((.....)))))))........(((((((......))))))).))))))))))-.. ( -27.30) >DroSim_CAF1 16056 119 - 1 CAUUAUUGUCU-GAAAUAGAAAAGGUUCCCUGGGAUAACUUGAUUAGACGCAACAUUCCGUUUGCUCCUUCGGCGAACAUUAUUCUUGAUUAAGUCACAUUAAUUAUGAUAAUGAUGGCC ((((((((((.-.....((((...((((((.((((...((.....))..((((........))))))))..)).))))....))))(((((((......))))))).))))))))))... ( -26.20) >DroEre_CAF1 15862 112 - 1 CAUUAUUGUCU-A------AAAGGGUUCCCUUGGAUAACUUGAUUAGACGCAACAUGGCGU-UGCUCCUUCGGCGAACAUUAUUCUUGAUUAAGUCACAUUAAUUAUGAUAAUGAUGGCC .......((((-(------(..(((((((...)))..))))..))))))(((((.....))-)))......(((.(.(((((((..(((((((......))))))).))))))).).))) ( -30.00) >consensus CAUUAUUGUCU_GAAAUAGAAAGGGUUCCCUGGGAUAACUUGAUUAGACGCAACAUUCCGUUUGCUCCUUCGGCGAACAUUAUUCUUGAUUAAGUCACAUUAAUUAUGAUAAUGAUGGCC ((((((((((...........(((....)))(((((((((.....))............(((((((.....))))))).)))))))(((((((......))))))).))))))))))... (-22.18 = -22.66 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:21 2006