Locus 7670

Sequence ID 3L_DroMel_CAF1
Location 20,576,725 – 20,576,826
Length 101
Max. P 0.726652
window12466

overview

Window 6

Location 20,576,725 – 20,576,826
Length 101
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 83.33
Mean single sequence MFE -22.87
Consensus MFE -14.93
Energy contribution -15.77
Covariance contribution 0.84
Combinations/Pair 1.12
Mean z-score -1.99
Structure conservation index 0.65
SVM decision value 0.41
SVM RNA-class probability 0.726652
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20576725 101 - 23771897
ACAGCAAAAAGA--ACUGUUGGCAAAAUAACAAUUAGAAAACAGUUGCAAAAGCUGAUCUGUUUUUUGCG-AUCAUUAAUCAUGCAAAAGAGCAGACAUUCGUA----------------
.((((......(--((((((..(.............)..)))))))......)))).(((((((((((((-((.....)))..)).))))))))))........---------------- ( -21.92)
>DroSec_CAF1 21543 101 - 1
ACAGCAAAAAGA--ACUGUUGGCAAAAUAACAAUUAGAAAACAGUUGCAAAAGCUGAUCUGUUUUUUGCG-AUCAUUAAUCAUGCAAAAGAGCAGACAUUUGUA----------------
.(((((......--..)))))(((((...............(((((.....))))).(((((((((((((-((.....)))..)).))))))))))..))))).---------------- ( -22.40)
>DroAna_CAF1 43112 120 - 1
AAAGCAGUCAGUCGUUUGUUGGCAAAAUAACAAUUAGAAAACAGUUGCAAAAGCUGAUCUGCUUCCAUCGGUUCAUUAAUCAUGCAAAAUAGCAGGCAUACUUAACGGGGUCGGGCUGUC
.((((((....((..((((((......))))))...))...(((((.....)))))..))))))....((((((........(((......)))(((...((....)).))))))))).. ( -25.90)
>DroSim_CAF1 15046 101 - 1
ACAGCAGAAAGA--ACUGUUGGCAAAAUAACAAUUAGAAAACAGUUGCAAAAGCUGAUCUGUUUUUUGCG-AUCAUUAAUCAUGCAAAAGAGCAGACAUUCGUA----------------
.((((((.....--.))))))...............(((..(((((.....))))).(((((((((((((-((.....)))..)).))))))))))..)))...---------------- ( -23.50)
>DroEre_CAF1 14802 96 - 1
ACAGCAA-AGGA--ACUGUUGGCAAAAUAACAAUUAGAAAACAGUUGCAAAAGCCGAUCUGUUUUUUGCG-AUCAUUAAUCAUGCAAAAGAGCAGGCACU--------------------
.......-.(.(--((((((..(.............)..))))))).)....(((((((.((.....)))-)))........(((......))))))...-------------------- ( -20.62)
>consensus
ACAGCAAAAAGA__ACUGUUGGCAAAAUAACAAUUAGAAAACAGUUGCAAAAGCUGAUCUGUUUUUUGCG_AUCAUUAAUCAUGCAAAAGAGCAGACAUUCGUA________________
.((((.........((((((..(.............)..)))))).......)))).(((((((((((((............))))))).))))))........................ (-14.93 = -15.77 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:18 2006