Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,302,208 – 2,302,313 |
Length | 105 |
Max. P | 0.610936 |
Location | 2,302,208 – 2,302,313 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 81.68 |
Mean single sequence MFE | -33.13 |
Consensus MFE | -22.50 |
Energy contribution | -23.45 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.27 |
Mean z-score | -1.57 |
Structure conservation index | 0.68 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.610936 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2302208 105 - 23771897 UAAGUGAAAUGUUGUGCCAUUUGCAAGUUGAGUGAGUUGGUCUCUCCUGCGCUCUGAGUUUGCUUUAGAUUCAGAUACAGCAAACGC---------ACUGCACGACUUGUGGCG ...((.(...(((((((....(((.....(((((....((.....))..)))))...(((((((.((........)).)))))))))---------)..)))))))...).)). ( -31.90) >DroSec_CAF1 51378 114 - 1 UAAGUGAAAUGUUGUGCCAUUUGCAAGUUGAGUGAGUUGGUCUCUCCUGCGGUCUGAGUUGGCUUUAGAUUCAGAUACAGCAAACCCUGCAGAUACCCUGCACGACUUGUGGCG ...((.(...(((((((.(((((((.((((((.((.....)).))).(((.(((((((((.......)))))))))...))))))..))))))).....)))))))...).)). ( -34.80) >DroSim_CAF1 51331 114 - 1 UAAGUGAAAUGUUGUGCCAUUUGCAAGUUGAGUGAGUUGGUCUCUCCUGCGGUCUGAGUUUGCUUUAGAUUCAGAUACAGCAAACCCUGCAGAUAUCCUGCACGACUUGUGGCG ...((.(...(((((((.(((((((.((((((.((.....)).))).(((.(((((((((((...)))))))))))...))))))..))))))).....)))))))...).)). ( -35.30) >DroEre_CAF1 54383 105 - 1 UAAGUGAAAUGUUGUGCCAUUUGCAAGUUGAGUAAGUUGGCCUCUGCUGCGGUCUGAGUUUAUUUUAGAUUCAGAUACAGCAAUCGC---------CCUGCACGACUUGUGGCG ...............(((....((((((((.(((....(((...(((((..(((((((((((...))))))))))).)))))...))---------).))).))))))))))). ( -36.60) >DroYak_CAF1 53917 105 - 1 UAAGUGAAAUGUUGUGCCAUUUGCAAGUUGAGUAAGUUGGUCGCUACUGCGUUCUGAGUUUAUUUUAGGUUCAGAUACAGCAAACAC---------CCAGCACGACUUGUGGCG ...((.(...(((((((...((((.......))))((((..(((....))).((((((..((...))..))))))..))))......---------...)))))))...).)). ( -26.70) >DroAna_CAF1 50564 100 - 1 UAAGUGAAAUGUUGUGUCAUUUGCAAGUCGAGCGAGUUAGUUUUUCGCCCGUCCUGUAUUUACUUU----UUAGAG--GGUCGACUUU--------GUGGCACGACUUGUGGCG ...((.(...((((((((((....((((((((((((.......)))))...((((.((........----.)).))--))))))))).--------))))))))))...).)). ( -33.50) >consensus UAAGUGAAAUGUUGUGCCAUUUGCAAGUUGAGUGAGUUGGUCUCUCCUGCGGUCUGAGUUUACUUUAGAUUCAGAUACAGCAAACCC_________CCUGCACGACUUGUGGCG ...............(((....((((((((.(((((.......))).(((.(((((((((((...)))))))))))...))).................)).))))))))))). (-22.50 = -23.45 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:43 2006