Locus 7669

Sequence ID 3L_DroMel_CAF1
Location 20,576,376 – 20,576,470
Length 94
Max. P 0.883923
window12465

overview

Window 5

Location 20,576,376 – 20,576,470
Length 94
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 95.94
Mean single sequence MFE -33.15
Consensus MFE -29.55
Energy contribution -29.92
Covariance contribution 0.38
Combinations/Pair 1.06
Mean z-score -2.13
Structure conservation index 0.89
SVM decision value 0.93
SVM RNA-class probability 0.883923
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20576376 94 + 23771897
GGCAUGGCAAAUAGCACGGUUCGGUGGCUAUUUGGCGGAGGGAAAAUCUGCGGGGUGGUAUGGCCGGAA-AAUUGCAUUUCCAAUGUCACGUGAG
(((((((.((((.(((...((((((.(((((((.(((((.......))))).)))))))...)))))).-...))))))))).))))).(....) ( -34.40)
>DroSec_CAF1 21198 94 + 1
GGCAUAGCAAAUAGCACGGUUCGUUGGCCAUUUGGCGGAGGGAAAAUCUGCGGGGUGGUAUGGCCGGAA-AAUUGCAUUUCCAAUGUCACGUGAG
(((((.((.....))..(((.(((..(((((((.(((((.......))))).)))))))))))))((((-(......))))).))))).(....) ( -30.40)
>DroSim_CAF1 14697 94 + 1
GGCAUGGCAAAUAGCACGGUUCCUUGGCCAUUUGGCGGAGGGAAAAUCUGCGGGGUGGCAUGGCCGGAA-AAUUGCAUUUCCAAUGUCACGUGAG
(((((((.((((.(((...((((...(((((((.(((((.......))))).)))))))......))))-...))))))))).))))).(....) ( -34.10)
>DroEre_CAF1 14448 95 + 1
GGCAUAGCAAAUAGCACGGUUCGGUGGCCAUUUGGCGGAGCGAAAAUCUGCGGGGUGGUAUGGCCGGAAAAAUUGCAUUUCCAAUGUCACGUGAG
(((((.(.((((.(((...((((((.(((((((.(((((.......))))).)))))))...)))))).....))))))).).))))).(....) ( -33.70)
>consensus
GGCAUAGCAAAUAGCACGGUUCGGUGGCCAUUUGGCGGAGGGAAAAUCUGCGGGGUGGUAUGGCCGGAA_AAUUGCAUUUCCAAUGUCACGUGAG
(((((.(.((((.(((...((((((.(((((((.(((((.......))))).)))))))...)))))).....))))))).).)))))....... (-29.55 = -29.92 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:17 2006