Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,575,425 – 20,575,538 |
Length | 113 |
Max. P | 0.910128 |
Location | 20,575,425 – 20,575,538 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.39 |
Mean single sequence MFE | -26.64 |
Consensus MFE | -23.62 |
Energy contribution | -24.14 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.06 |
Mean z-score | -1.48 |
Structure conservation index | 0.89 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910128 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20575425 113 + 23771897 GUC---GGAGUCUGUUACACUUUCACAGAACUCAAAAUGUCGUAUUUCACGUAUUUUUACGAGCGUUCGCGUAAAUUUAUGCGAAAAAUCAUAAAUAAUCUGGGCAUA-GCUGCCUU--- ...---.((((((((.........)))).))))((((((.(((.....)))))))))...((...((((((((....))))))))...))...........(((((..-..))))).--- ( -26.30) >DroSec_CAF1 20204 113 + 1 GUC---GGAGUCUGUUACACUUUCACAGAACUCAAAAUGUCGUAUUUCACGAAUUUUUACGAGCGUUCGCGUAAAUUUAUGCGAAAAAUCAUAAAUAAUCUGGGCAUA-GCUGCCUU--- ...---.((((((((.........)))).))))((((..((((.....))))..))))..((...((((((((....))))))))...))...........(((((..-..))))).--- ( -26.30) >DroAna_CAF1 41697 120 + 1 GUCUAGAGACUGUGUUACACUUUCACAGAACUCAAAAUGUCGUAUUUCACGCAUUUUUACGAGCGUUCGCGUAAAUUUAUGCGAAAAAUCAUAAAUAACCCGGGCAUAAGCUGCCUUCUA .....(((.(((((.........)))))..)))((((((.(((.....)))))))))...((...((((((((....))))))))...))...........(((((.....))))).... ( -28.90) >DroSim_CAF1 13713 113 + 1 GUC---GGAGUCUGUUACACUUUCACAGAACUCAAACUGUCGUAUUUCACGCAUUUUUACGAGCGUUCGCGUAAAUUUAUGCGAAAAAUCAUAAAUAAUCUGGGCAUA-GCUGCCUU--- ((.---.((((((((.........)))).))))..))((.(((.....)))))..((((.((...((((((((....))))))))...)).))))......(((((..-..))))).--- ( -26.20) >DroEre_CAF1 13500 113 + 1 GUC---GGAGUCUGUUACACUUUCACAGAACUCAAAAUGUCGUAUUUCACGCAUUUUUACGAGCGUUCGCGUAAAUUUAUGCGAAAAAUCAUAAAUAACCUGGGCAUA-GCUGCUUU--- ...---.((((((((.........)))).))))((((((.(((.....)))))))))...((...((((((((....))))))))...))...........(((((..-..))))).--- ( -25.50) >consensus GUC___GGAGUCUGUUACACUUUCACAGAACUCAAAAUGUCGUAUUUCACGCAUUUUUACGAGCGUUCGCGUAAAUUUAUGCGAAAAAUCAUAAAUAAUCUGGGCAUA_GCUGCCUU___ .......((((((((.........)))).))))((((((.(((.....)))))))))...((...((((((((....))))))))...))...........(((((.....))))).... (-23.62 = -24.14 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:14 2006