| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,293,374 – 2,293,488 |
| Length | 114 |
| Max. P | 0.982299 |
| Location | 2,293,374 – 2,293,488 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.49 |
| Mean single sequence MFE | -33.98 |
| Consensus MFE | -21.84 |
| Energy contribution | -23.76 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.982299 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2293374 114 + 23771897 ---AGGGUAAAUCUGUAUUAAAACCUAUUAACAAUAUGUUG-AGUGCACAUAUAUCCACGCAUGGUCGCCUGUGUGCGGAAAUGAAAGUUUUCGCAGCUGCGGUCAGGUACGACAAAU ---.(((((.((.((((((..(((.(((.....))).))).-)))))).)).)))))..((.((..(((..((.(((((((((....))))))))))).)))..)).))......... ( -33.60) >DroSec_CAF1 42637 110 + 1 GUUAAGUUAAAUCUGUAUU-------ACUAACAAUAUGUUG-AGUGCACAUAUAUCCACGCAUGGUCGCCUGUGUGCGGAAAUGAAAGUUUUCGCAGCUGCGGUCAGGUACGACAUAU ((((.((............-------)))))).((((((((-.(((..........)))((.((..(((..((.(((((((((....))))))))))).)))..)).)).)))))))) ( -31.40) >DroEre_CAF1 45589 117 + 1 GGCAAGUUAAAUCCCCAUUAAAAUCGA-UACAAAUAGGUUGCUGUGCACAUAUAUGCACGCAUGGCCGCCUCUGUGCGGAAAUGAAAGUUUUCGCAGCAGCGGUCAGGUACGACAAAU .......................(((.-(((........(((.(((((......))))))))(((((((...(((((((((((....))))))))).))))))))).))))))..... ( -36.70) >DroYak_CAF1 44220 117 + 1 CGUAAGUAAAAACAGUAUUUAAAUCUA-UAAAAUUAUGUUGCCGUGCACAUAUGUCCACGCAUGGCCGCCUGUGUGCGGAAAUGAAAGUUUUCGCAGCUGCGGUCAGGUACGACAAAU ..((((((.......))))))......-........((((((((((.((....)).)))...(((((((..((.(((((((((....))))))))))).))))))))))..))))... ( -34.40) >DroAna_CAF1 41640 109 + 1 UCUCUUUAAAAUACCUUUUU--CUUUA-CGUGCAUAUGGUGAUGGGAACA------CAUGCAUGACCGCCUCUGGGCGGAUAUGAAAGUUUUCGCUCUUGCGGUCAGGUACGACAAAU ...........(((((....--.....-.((((((.((..........))------.))))))((((((....(((((((.((....)).)))))))..)))))))))))........ ( -33.80) >consensus GGUAAGUUAAAUCCGUAUUAAAAUCUA_UAAAAAUAUGUUG_AGUGCACAUAUAUCCACGCAUGGCCGCCUGUGUGCGGAAAUGAAAGUUUUCGCAGCUGCGGUCAGGUACGACAAAU ....................................(((((..(((..........)))((.(((((((.....(((((((((....)))))))))...))))))).)).)))))... (-21.84 = -23.76 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:42 2006