Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,569,671 – 20,569,786 |
Length | 115 |
Max. P | 0.846132 |
Location | 20,569,671 – 20,569,786 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 97.09 |
Mean single sequence MFE | -36.13 |
Consensus MFE | -35.29 |
Energy contribution | -35.07 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.88 |
Structure conservation index | 0.98 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846132 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20569671 115 + 23771897 UGUUUUGUGCACUAAAACCAUUUUUUCCAGUAUGCUCGCUGGGUGUCUGUCUUCUGAGUCUGGGCCUUGCUCUCCACUCGACUCGAGUUGAGUCGCUUGUGCUCAGCACUCGGUU .((((((.....)))))).......((((((......))))))..........(((((((((((((..((.(((.(((((...))))).)))..))..).)))))).)))))).. ( -37.20) >DroSec_CAF1 14619 114 + 1 -GUUUUGUGCACUGAAACUAUUUUUUCCAGUAUGCUCCCUGGGUGUCUGUCUUCUGAGUCUGGGCCUUGCUCUCCACUCGACUCGAGUUGAGUCGCCUGUGCUCAGCACUCGGUU -(((((.......))))).........(((.(((((.....))))))))....(((((((((((((..((.(((.(((((...))))).)))..))..).)))))).)))))).. ( -35.00) >DroSim_CAF1 8090 114 + 1 -GUUUUGUGCACUGAAACUAUUUUUUCCAGUAUGCUCGCUGGGUGUCUGUCUUCUGAGUCUGGGCCUUGCUCUCCACUCGACUCGAGUUGAGUCGCCUGUGCUCAGCACUCGGUU -(((((.......))))).......((((((......))))))..........(((((((((((((..((.(((.(((((...))))).)))..))..).)))))).)))))).. ( -36.20) >consensus _GUUUUGUGCACUGAAACUAUUUUUUCCAGUAUGCUCGCUGGGUGUCUGUCUUCUGAGUCUGGGCCUUGCUCUCCACUCGACUCGAGUUGAGUCGCCUGUGCUCAGCACUCGGUU .((((((.....)))))).......(((((........)))))..........(((((((((((((..((.(((.(((((...))))).)))..))..).)))))).)))))).. (-35.29 = -35.07 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:01 2006