Locus 7658

Sequence ID 3L_DroMel_CAF1
Location 20,569,436 – 20,569,550
Length 114
Max. P 0.500000
window12448

overview

Window 8

Location 20,569,436 – 20,569,550
Length 114
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 96.49
Mean single sequence MFE -32.17
Consensus MFE -31.40
Energy contribution -30.30
Covariance contribution -1.10
Combinations/Pair 1.16
Mean z-score -1.38
Structure conservation index 0.98
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20569436 114 - 23771897
UAGUUUGAAAAGUUUUUUUGCAAGUGCCGUCGGGAGCGCGUUCAAGAAAAGGAGCAGCUUCGGAUCAGGCCAAAAGCAAAGUUGGGGGUGUUGAGGCACAGGAAUGGUGGGAUG
..((((.(...((((((.(((.((..(((((.(((((..((((........)))).))))).)))....((((........)))).))..))...))).))))))..).)))). ( -31.00)
>DroSec_CAF1 14212 114 - 1
UAGUUUGAAAAGUUUUUUUGCAAGUGCCGCCGGGAGCGCGUUCAAGAAAAGGAGCAGCUUCGGAUCAGGCCAAAAGCAAAGUUGGGGGUGUUGAGGCACAAGAAUGGCAGGAAG
...((((....((((((.(((.((..((.((((((((..((((........)))).)))))((......))...........))).))..))...))).))))))..))))... ( -31.50)
>DroSim_CAF1 7868 114 - 1
UAGUCUGAAAAGUUUUUUUGCAAGUGCCGCCGGGAGCGCGUUCAAGAAAAGGAGCAGCUUCGGAUCAGGCCAAAAGCAAAGUUGGGGGUGUUGAGGCACAAGAAUGGCAGGAAG
...((((....((((((.(((.((..((.((((((((..((((........)))).)))))((......))...........))).))..))...))).))))))..))))... ( -34.00)
>consensus
UAGUUUGAAAAGUUUUUUUGCAAGUGCCGCCGGGAGCGCGUUCAAGAAAAGGAGCAGCUUCGGAUCAGGCCAAAAGCAAAGUUGGGGGUGUUGAGGCACAAGAAUGGCAGGAAG
...((((....((((((.(((.((..((.((((((((..((((........)))).)))))((......))...........))).))..))...))).))))))..))))... (-31.40 = -30.30 +  -1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:00 2006