Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,567,920 – 20,568,036 |
Length | 116 |
Max. P | 0.506769 |
Location | 20,567,920 – 20,568,036 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.86 |
Mean single sequence MFE | -28.04 |
Consensus MFE | -19.68 |
Energy contribution | -19.88 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -1.75 |
Structure conservation index | 0.70 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506769 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20567920 116 + 23771897 AGUGCAGCAAACGCAAUUCCCAACUAUUUGUUUUGUAUCUCAA--AAAUUCUACGGCGUUUGAUUUCGAGAGCCUAACAAUUAAGUUCUCGAAAA-GACAGC-CAACCUGUUCGGAAUUU ......((....))((((((.(((......(((((.....)))--)).......(((((((..((((((((((.((.....)).)))))))))))-))).))-).....))).)))))). ( -28.60) >DroSec_CAF1 12702 115 + 1 AGUGCAGCAAACGCAAUUCCCAACUAUUU-UUUUGUAUCUCAA--AAAUUCUACGGCGUUCGGUUUCGAGAGCCUAACAAUUAAGUUCUCGAAAA-GACAGC-CAACCUGUUCGGAAUUU ......((....))((((((.(((....(-(((((.....)))--)))......(((..((..((((((((((.((.....)).)))))))))).-))..))-).....))).)))))). ( -29.90) >DroAna_CAF1 33868 120 + 1 AGUGCAGCAACCGCAAUGCCCAACUAUUCGGUUUGUCUUUCAAAUAAAUUCUACGCUGUAGUGUUUCGAGAGCACAACAAUUAUAUUCUCGAAGAGGACAGUUCGACCUGUUCGGAAUUA ..((((((.((((.((((......))))))))(((.....)))...........))))))((((((...)))))).........((((.((((.(((.(.....).))).)))))))).. ( -27.30) >DroSim_CAF1 6356 116 + 1 AGUGCAGCAAACGCAAUUCCCAACUAUUUGUUUCGUAUCUCAA--AAAUUCUACGGCGUUCGGUUUCGAGAGCCUAACAAUUAAGUUCUCGAAAA-GACAGC-CAACCUGUUCGGAAUUU ......((....))((((((.(((..((((..........)))--)........(((..((..((((((((((.((.....)).)))))))))).-))..))-).....))).)))))). ( -27.50) >DroEre_CAF1 6265 115 + 1 AGUGCAGCAGACGCAAUUCCCAACUAUUUGCUUUGUAUC-CAA--AAAUUCUACGCCGUAUUGCUUCGAGAGCCUAACAAUUAAGUUCUCGAAGA-GACAGC-CAACCUGUUCGGAAUUU ......(((((.((((...........)))))))))...-...--(((((((...........((((((((((.((.....)).)))))))))).-(((((.-....))))).))))))) ( -26.90) >consensus AGUGCAGCAAACGCAAUUCCCAACUAUUUGUUUUGUAUCUCAA__AAAUUCUACGGCGUUCGGUUUCGAGAGCCUAACAAUUAAGUUCUCGAAAA_GACAGC_CAACCUGUUCGGAAUUU ......((....))((((((...........................................((((((((((.((.....)).))))))))))..(((((......))))).)))))). (-19.68 = -19.88 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:46 2006