Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,290,562 – 2,290,659 |
Length | 97 |
Max. P | 0.654563 |
Location | 2,290,562 – 2,290,659 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 76.69 |
Mean single sequence MFE | -22.32 |
Consensus MFE | -9.95 |
Energy contribution | -13.16 |
Covariance contribution | 3.21 |
Combinations/Pair | 1.00 |
Mean z-score | -2.07 |
Structure conservation index | 0.45 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654563 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2290562 97 - 23771897 UU-UACCCUCUAAUUCCGAUUAAGCAAUGCAUGUAAUUCGCAGUAUGCGCAUAUCAUAUAU--AUGUACAUGUGCUCCAUUUGAAUUGCUUGGCUGGGAU ..-.........((((((.(((((((((.((........(((.((((..(((((.....))--)))..)))))))......)).))))))))).)))))) ( -25.04) >DroSec_CAF1 40189 94 - 1 UUCUGCCCUCUAAUUCCGAUUAAGCAAUGCAUGUAAUUCGCAGUAUGCGCAUAUCAUAUAU------ACAUGUGCUCCAUUUGAAUUGCUUGGCUGGGAU ............((((((.((((((((((((((..........)))))((((((.......------..)))))).........))))))))).)))))) ( -22.00) >DroSim_CAF1 40506 93 - 1 UU-UGCCCUUUAAUUCCGAUUAAGCAAUGCAUGUAAUGCGCAGUAUGCGCAUAUCAUAUAU------ACAUGUGCUCCAUUUGAAUUGCUUGGCUGGGAU ..-.........((((((.((((((((((((((((((((((.....))))))........)------))))))..((.....))))))))))).)))))) ( -27.20) >DroEre_CAF1 42896 98 - 1 UU--CCCCUCUAAUUCCGAUUAAGCAAUGCAUGUAAUUCUCAGUAUGCGUAUAAAAUAUAUGUAUGUACAUUUGCUCGAUUUGAACUGCUUGGCUGGCAU ..--.........(((.(((..(((((...(((((........((((((((((...))))))))))))))))))))..))).))).((((.....)))). ( -19.60) >DroYak_CAF1 41226 77 - 1 UU--CCCCUCUUAUUCCGAUUAAGCAAUGCAUGUAAUUCUCGGUA---------------------UACAUUUGCUGGAUUUAAAUUGCUUGGCUGGGAU ..--........((((((.(((((((((.....(((.((.(((((---------------------......))))))).))).))))))))).)))))) ( -21.00) >DroAna_CAF1 39242 80 - 1 UC-UGCCCUCUGAUUCCGAUUAAGCAAUGCCUUUAAUUCUCA--------------UA--U--UUGUACUUGUA-UGCAUUGAAAUUGCUCGGCUGGCAG .(-((((..((((...(((((...((((((...(((....((--------------..--.--.))...)))..-.)))))).))))).))))..))))) ( -19.10) >consensus UU_UGCCCUCUAAUUCCGAUUAAGCAAUGCAUGUAAUUCGCAGUAUGCGCAUAUCAUAUAU_____UACAUGUGCUCCAUUUGAAUUGCUUGGCUGGGAU ............((((((.((((((((((((((((.......(((((.......))))).......)))))))...........))))))))).)))))) ( -9.95 = -13.16 + 3.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:41 2006