Locus 765

Sequence ID 3L_DroMel_CAF1
Location 2,290,562 – 2,290,659
Length 97
Max. P 0.654563
window1180

overview

Window 0

Location 2,290,562 – 2,290,659
Length 97
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 76.69
Mean single sequence MFE -22.32
Consensus MFE -9.95
Energy contribution -13.16
Covariance contribution 3.21
Combinations/Pair 1.00
Mean z-score -2.07
Structure conservation index 0.45
SVM decision value 0.25
SVM RNA-class probability 0.654563
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2290562 97 - 23771897
UU-UACCCUCUAAUUCCGAUUAAGCAAUGCAUGUAAUUCGCAGUAUGCGCAUAUCAUAUAU--AUGUACAUGUGCUCCAUUUGAAUUGCUUGGCUGGGAU
..-.........((((((.(((((((((.((........(((.((((..(((((.....))--)))..)))))))......)).))))))))).)))))) ( -25.04)
>DroSec_CAF1 40189 94 - 1
UUCUGCCCUCUAAUUCCGAUUAAGCAAUGCAUGUAAUUCGCAGUAUGCGCAUAUCAUAUAU------ACAUGUGCUCCAUUUGAAUUGCUUGGCUGGGAU
............((((((.((((((((((((((..........)))))((((((.......------..)))))).........))))))))).)))))) ( -22.00)
>DroSim_CAF1 40506 93 - 1
UU-UGCCCUUUAAUUCCGAUUAAGCAAUGCAUGUAAUGCGCAGUAUGCGCAUAUCAUAUAU------ACAUGUGCUCCAUUUGAAUUGCUUGGCUGGGAU
..-.........((((((.((((((((((((((((((((((.....))))))........)------))))))..((.....))))))))))).)))))) ( -27.20)
>DroEre_CAF1 42896 98 - 1
UU--CCCCUCUAAUUCCGAUUAAGCAAUGCAUGUAAUUCUCAGUAUGCGUAUAAAAUAUAUGUAUGUACAUUUGCUCGAUUUGAACUGCUUGGCUGGCAU
..--.........(((.(((..(((((...(((((........((((((((((...))))))))))))))))))))..))).))).((((.....)))). ( -19.60)
>DroYak_CAF1 41226 77 - 1
UU--CCCCUCUUAUUCCGAUUAAGCAAUGCAUGUAAUUCUCGGUA---------------------UACAUUUGCUGGAUUUAAAUUGCUUGGCUGGGAU
..--........((((((.(((((((((.....(((.((.(((((---------------------......))))))).))).))))))))).)))))) ( -21.00)
>DroAna_CAF1 39242 80 - 1
UC-UGCCCUCUGAUUCCGAUUAAGCAAUGCCUUUAAUUCUCA--------------UA--U--UUGUACUUGUA-UGCAUUGAAAUUGCUCGGCUGGCAG
.(-((((..((((...(((((...((((((...(((....((--------------..--.--.))...)))..-.)))))).))))).))))..))))) ( -19.10)
>consensus
UU_UGCCCUCUAAUUCCGAUUAAGCAAUGCAUGUAAUUCGCAGUAUGCGCAUAUCAUAUAU_____UACAUGUGCUCCAUUUGAAUUGCUUGGCUGGGAU
............((((((.((((((((((((((((.......(((((.......))))).......)))))))...........))))))))).)))))) ( -9.95 = -13.16 +   3.21) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:41 2006