Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,566,073 – 20,566,191 |
Length | 118 |
Max. P | 0.817453 |
Location | 20,566,073 – 20,566,191 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.09 |
Mean single sequence MFE | -33.00 |
Consensus MFE | -27.77 |
Energy contribution | -29.40 |
Covariance contribution | 1.63 |
Combinations/Pair | 1.06 |
Mean z-score | -1.77 |
Structure conservation index | 0.84 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.817453 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20566073 118 - 23771897 GGUGUGGCACGUCGCAAAAAAAA-AACACAAAAUA-AAAAAAGGAAACUGGGAGGAGGAGAAGUCUGCUGCCUGUGAUGCUGCUACUCUAGCUGACUGGACCAAGACUCUUGGCCCAAGG ((.(((((((((((((.......-...........-.....((....))((.((.(((.....))).)).))))))))).)))))).)).......(((.(((((...))))).)))... ( -36.20) >DroSec_CAF1 10872 116 - 1 GGUGUGGCACGUCGCAAAAAAAA-AAAACAAA---AAAAAAAGGAAACUGGGAGAAGGAGAAGUCUGCUGCCUGUGAUGCUGCUACUCUAGCUGACUGGACCAAGACUCUUGGCCCAAGG ((.((((((((((((........-........---......((....))(((...((.((....)).)).))))))))).)))))).)).......(((.(((((...))))).)))... ( -34.80) >DroAna_CAF1 32122 106 - 1 GGUGUGGCACGUCGCAAAAAAACAAAAA--------AAAUAUAUAAACUGGGAGGAG----AGUCUGUUGCCUGUGAUGCUGCUACUCGGGCUGACUGGACCAAGAC--CUGGCCCGAAG ...(((((((((((((............--------.............((.((.((----...)).)).))))))))).))))))(((((((....((.......)--).))))))).. ( -29.41) >DroEre_CAF1 4363 109 - 1 GGUGUGGCACGUCGCAAAAAGAA----AC-----A-AAAAAAGGAAACUGGGAGGAGGAGAAGU-GGCUGCCUGUGAUGCUGCUACUCUAGCUGACUGGACCAAGACUCUUGGCCCAAGG ((.(((((((((((((.......----..-----.-.....((....))((.((..........-..)).))))))))).)))))).)).......(((.(((((...))))).)))... ( -31.60) >consensus GGUGUGGCACGUCGCAAAAAAAA_AAAAC_______AAAAAAGGAAACUGGGAGGAGGAGAAGUCUGCUGCCUGUGAUGCUGCUACUCUAGCUGACUGGACCAAGACUCUUGGCCCAAGG ((.(((((((((((((.........................((....))((.((.(((.....))).)).))))))))).)))))).)).......(((.(((((...))))).)))... (-27.77 = -29.40 + 1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:40 2006