Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,560,555 – 20,560,651 |
Length | 96 |
Max. P | 0.776894 |
Location | 20,560,555 – 20,560,651 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 96.53 |
Mean single sequence MFE | -36.61 |
Consensus MFE | -33.09 |
Energy contribution | -33.54 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -2.11 |
Structure conservation index | 0.90 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.776894 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20560555 96 + 23771897 UCCGCAUUUCCCAUGGCCGCGUUAUGUGAGAAAGUAGCCGGCCAACGCCAACAGAUGGGCAAUAAAAUGGCCAGGCCCACAAGGUGCAUCUGGGAG ........(((((((((((.(((((........))))))))))).((((....(.(((((..............))))))..))))....))))). ( -32.94) >DroSim_CAF1 103938 96 + 1 UCCGCAUUUCCCAUGGCCGGGUUAUGUGAGAAAGUAGCCGGCCUGCGCCAACAGAUGGGCAAUAAAAUGGCCAGGCCCACAAGGCGCAUCUGGGAG ........(((((.((((((.((((........))))))))))((((((....(.(((((..............))))))..))))))..))))). ( -38.14) >DroEre_CAF1 105097 95 + 1 UCCGCAUUUCCCAUGGC-GGGUUAUGUGAGAAAGUAGCCGGCCAGCGCCAACAGAUGGGCAAUAAAAUGGCCAGGCCCACAAGGCGCAUCUGGGAG ........(((((((((-.((((((........)))))).))))(((((....(.(((((..............))))))..)))))...))))). ( -38.74) >consensus UCCGCAUUUCCCAUGGCCGGGUUAUGUGAGAAAGUAGCCGGCCAGCGCCAACAGAUGGGCAAUAAAAUGGCCAGGCCCACAAGGCGCAUCUGGGAG ........(((((.(((((.(((((........)))))))))).(((((....(.(((((..............))))))..)))))...))))). (-33.09 = -33.54 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:35 2006