| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,559,345 – 20,559,438 |
| Length | 93 |
| Max. P | 0.714026 |
| Location | 20,559,345 – 20,559,438 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 96.42 |
| Mean single sequence MFE | -26.20 |
| Consensus MFE | -24.89 |
| Energy contribution | -25.67 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.714026 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20559345 93 + 23771897 AAAUCGUGGACAGUGAUAAAUUGGCAGAUCAGUCGGGGCCCUAGGGCGAUAUCAAUCAGCUGUGGAAGUGGUCCAAACAAAUUGCUCCACAAU .....(((((((((.....))))((((....((..((((((((.((((((....))).))).)))....)))))..))...)))))))))... ( -27.70) >DroSim_CAF1 102702 93 + 1 AAAUCGUGGACAGUGAUAAAUUGGCAGAUCAGUCGGAACCCUUGGGCGAUAUCAAUCAGCUUUGGAAGUGGUCCAAACAAAUUGCUCCACAAU .....(((((((((........(((......)))(((.((((((((((((....))).))))...))).)))))......)))).)))))... ( -22.90) >DroEre_CAF1 103913 93 + 1 AAAUCGUGGACAGUGAUAAAUUGGCAGAUCAGUAGGGGCCCUAGGGCGAUAUCAAUCAGCUUUGGAAGUGGUCCAAACAAAUUGCUCCACAAU .....(((((((((.....))))((((....((..(((((((((((((((....))).)))))))....)))))..))...)))))))))... ( -28.00) >consensus AAAUCGUGGACAGUGAUAAAUUGGCAGAUCAGUCGGGGCCCUAGGGCGAUAUCAAUCAGCUUUGGAAGUGGUCCAAACAAAUUGCUCCACAAU .....(((((((((.....))))((((....((..(((((((((((((((....))).)))))))....)))))..))...)))))))))... (-24.89 = -25.67 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:34 2006