Locus 7643

Sequence ID 3L_DroMel_CAF1
Location 20,557,882 – 20,557,974
Length 92
Max. P 0.794036
window12418

overview

Window 8

Location 20,557,882 – 20,557,974
Length 92
Sequences 3
Columns 113
Reading direction reverse
Mean pairwise identity 85.53
Mean single sequence MFE -26.53
Consensus MFE -22.69
Energy contribution -22.69
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.90
Structure conservation index 0.86
SVM decision value 0.60
SVM RNA-class probability 0.794036
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20557882 92 - 23771897
ACGACUUUAGUCCAUUUUCAUACACAUUCCGCUCCGAAUUUACCGAUUCCGCAUUC---------------------UGCAAGUCACUCGAAGUUCGAGUUUCGGCGGCGGCA
..(((....)))................((((((((((......((((..((....---------------------.)).))))(((((.....)))))))))).))))).. ( -24.90)
>DroSim_CAF1 101244 92 - 1
ACGACUUUAGUCCAUUUUCAUACACAUUCCGCUCCGAAUUCACCGAUUCCGCAUUC---------------------UGCAAGUCACUCGAAGUUCGAGUUUCGGCGGCGGCA
..(((....)))................((((((((((......((((..((....---------------------.)).))))(((((.....)))))))))).))))).. ( -24.90)
>DroEre_CAF1 102363 113 - 1
ACGACUUUAGUCCAUUUUCAUACACAUUCCGCUCCGAAUUCACCGAUUCUGCAUUCUGCAUUCUGCGUUCUGCGUUCUGCAAGUCACUCGAAGUUCGAGUUUCGGCGGCGGCA
..(((....)))................((((((((((......((((.((((...((((..........))))...))))))))(((((.....)))))))))).))))).. ( -29.80)
>consensus
ACGACUUUAGUCCAUUUUCAUACACAUUCCGCUCCGAAUUCACCGAUUCCGCAUUC_____________________UGCAAGUCACUCGAAGUUCGAGUUUCGGCGGCGGCA
..(((....)))................((((((((((......((((..(((........................))).))))(((((.....)))))))))).))))).. (-22.69 = -22.69 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:31 2006