Locus 7642

Sequence ID 3L_DroMel_CAF1
Location 20,555,677 – 20,555,790
Length 113
Max. P 0.609238
window12417

overview

Window 7

Location 20,555,677 – 20,555,790
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 72.34
Mean single sequence MFE -35.61
Consensus MFE -15.37
Energy contribution -16.02
Covariance contribution 0.64
Combinations/Pair 1.23
Mean z-score -1.79
Structure conservation index 0.43
SVM decision value 0.15
SVM RNA-class probability 0.609238
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20555677 113 - 23771897
GCGAAACGAGAACAUAUAUGCCGGGUAUAUA-ACUCGCCCGAUGCA--CGGGAGAUGGCCUUAUAGUCCGGUCUCGUUUUC-GCCCACG-GCAAACGGGAUCG-GCUCGUU-UAUCUAAA
...(((((((....((((.(((((((.....-)))).((((.....--))))....)))..))))..((((((((((((..-(((...)-)))))))))))))-)))))))-)....... ( -41.90)
>DroVir_CAF1 105854 102 - 1
AUGAAAUGAGUAAAUAAGUUC-GCGUUU----AGUCGAGCAAAGC------GG---CGCUACAUAGUGCGCACUCCCUCUU-ACCCACA--CAAUGGAUAGCU-GCUCUUUAUAUUUAUA
.........(((((((.((((-((....----.).)))))..(((------((---(....(((.(((.(...........-...).))--).)))....)))-))).....))))))). ( -22.24)
>DroPse_CAF1 116818 111 - 1
AUGAAACGGUAACAUAUAU-------AUAUACUGGGGGCCUGUACAUAAGCGACAAGGCAAUAUAGUCCGGUCUCGUUUUG-GCCCACGGGCAAACGGGAUCGCGUUCGUU-UAUUUAUA
.......(((..(.(((..-------..)))...)..)))((((.(((((((((..(((......)))((((((((((...-(((....))).)))))))))).).)))))-))).)))) ( -32.10)
>DroSim_CAF1 99019 113 - 1
GCGAAACGAGAACAUAUAUGCCGGGUAUAUA-ACUCGCCCGAUGCA--CGGGAGACGGCCUUAUAGUCCGGUCUCGUUUUC-GCCCACG-GCAAACGGGAUCG-GCUCGUU-UAUCUAUA
...(((((((....((((.(((((((.....-)))).((((.....--))))....)))..))))..((((((((((((..-(((...)-)))))))))))))-)))))))-)....... ( -42.20)
>DroEre_CAF1 100120 114 - 1
GCGAAACGAGAACAUAUAUGCCGGGUAUAUAAACUCGCCCGAUGCA--CGGGAGACGGCCAUAUAGUCCGGUCUCGUUUUC-GCCCACG-GCAAACGGGAUCG-GCUCGUU-UAUCUAUA
...(((((((....((((((((((((......)))).((((.....--))))....)).))))))..((((((((((((..-(((...)-)))))))))))))-)))))))-)....... ( -43.90)
>DroPer_CAF1 118807 114 - 1
AUGAAACGGUAACAUAUAUA-----UAUAUACAGGGGGCCUGUACAUAAGCGACAUGGCAAUAUAGUCCGGUCUCGUUUUGGGCCCACGGGCAACCGGGAUCGCGUUCGUU-UAUUUAUA
...((((((..((.......-----(((.((((((...)))))).))).((((............((((((.......))))))((.(((....))))).)))))))))))-)....... ( -31.30)
>consensus
ACGAAACGAGAACAUAUAUGC_GGGUAUAUA_ACUCGCCCGAUGCA__CGGGAGACGGCCAUAUAGUCCGGUCUCGUUUUC_GCCCACG_GCAAACGGGAUCG_GCUCGUU_UAUCUAUA
....((((((..............................................(((......)))(((((((((((...((......)))))))))))))..))))))......... (-15.37 = -16.02 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:30 2006