Locus 7638

Sequence ID 3L_DroMel_CAF1
Location 20,552,927 – 20,553,040
Length 113
Max. P 0.770855
window12407

overview

Window 7

Location 20,552,927 – 20,553,040
Length 113
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 95.58
Mean single sequence MFE -27.25
Consensus MFE -23.76
Energy contribution -24.20
Covariance contribution 0.44
Combinations/Pair 1.08
Mean z-score -1.90
Structure conservation index 0.87
SVM decision value 0.53
SVM RNA-class probability 0.770855
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20552927 113 - 23771897
CUUUAUAAUGCAAAUAGCGUGUAUAGCUUUAUUUGCCAGAAUAUUUGUUACAAAAAUUCGAAAACGCAGGCGAAAUCCAUGGGAAUGGCAUUAACUGCGGCACUGAAAGAAAU
..(((((((((.....)))).)))))((((...((((.((((.((((...)))).))))......((((..((...((((....))))..))..))))))))...)))).... ( -25.70)
>DroSec_CAF1 94813 113 - 1
CUUUAUAAUGCAAAUAGCGUGUAAAGCUUUAUUUGCCAGAAUAUUUGUUACAAAAAUUCGAAAACGCAGGCGGGAUCCAUGGGAAUGGCAUUAACUGCGGCACUGAAAGAAAU
(((((((.(((.....))))))))))((((...((((.((((.((((...)))).))))......((((....(((((((....)))).)))..))))))))...)))).... ( -29.60)
>DroSim_CAF1 96303 113 - 1
CUUUAUAAUGCAAAUAGCGUGUAAAGCUUUAUUUGCCAGAAUAUUUGUUACAAAAAUUCGAAAACGCAGGCGAGAUCCAUGGGAAUGGCAUUAACUGCGGCACUGAAAGAAAU
(((((((.(((.....))))))))))((((...((((.((((.((((...)))).))))......((((..((...((((....))))..))..))))))))...)))).... ( -29.40)
>DroEre_CAF1 97368 113 - 1
CUUUAUAAUGCAAAUAGCGUGUAAAGCUUUAUUUGCCAGAAUAUUUGUUACAAAAAUUCGAAAACUCAGGCAAGAUCCAUGGGAAUGGCAUUAGCUGCAGCACUGAGCGAAAC
.........((.....))((((..((((.....(((((((((.((((...)))).)))).....((((((......)).))))..)))))..))))...)))).......... ( -24.30)
>consensus
CUUUAUAAUGCAAAUAGCGUGUAAAGCUUUAUUUGCCAGAAUAUUUGUUACAAAAAUUCGAAAACGCAGGCGAGAUCCAUGGGAAUGGCAUUAACUGCGGCACUGAAAGAAAU
(((((((.(((.....))))))))))((((...((((.((((.((((...)))).))))......((((..((...((((....))))..))..))))))))...)))).... (-23.76 = -24.20 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:21 2006