Locus 7637

Sequence ID 3L_DroMel_CAF1
Location 20,551,856 – 20,551,956
Length 100
Max. P 0.530624
window12406

overview

Window 6

Location 20,551,856 – 20,551,956
Length 100
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 82.40
Mean single sequence MFE -20.96
Consensus MFE -14.26
Energy contribution -13.90
Covariance contribution -0.36
Combinations/Pair 1.25
Mean z-score -1.52
Structure conservation index 0.68
SVM decision value -0.01
SVM RNA-class probability 0.530624
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20551856 100 - 23771897
AGCA-UACAAAAUAUCAAAUGCAAAUGUGGCAAGCAGGCCGCAAGGUUUCAAGACAAACGGCA--AGCAGCAAACACCUGUUGUCAGUUAACAUGCCUCCUCG
.(((-(............))))......((((.(.(((((....)))))).........(((.--.((((((......))))))..)))....))))...... ( -22.10)
>DroPse_CAF1 112110 90 - 1
CGCU-UCAAAAAUAUCAAAUGCAAAUGUGGCAAGCAGACAACAA------------AGCGGCCACAACAGCAAACACCUGUUGCCAGUUAACAUGCCACACAC
.((.-...............))...(((((((.((.........------------.))(((...(((((.......))))))))........)))))))... ( -19.29)
>DroSec_CAF1 93728 100 - 1
AGCA-UACAAAAUAUCAAAUGCAAAUGUGGCAAGCAGGCCGCAAGGUUUCAAGACAAACGGCA--AGCAGCAAACACCUGUUGUCAGUUAACAUGCCUCCUGG
.(((-(............))))......((((.(.(((((....)))))).........(((.--.((((((......))))))..)))....))))...... ( -22.10)
>DroSim_CAF1 95241 100 - 1
AGCA-UACAAAAUAUCAAAUGCAAAUGUGGCAAGCAGGCCGCAAGGUUUCAAGACAAACGGCA--AGCAGCAAACACCUGUUGUCAGUUAACAUGCCUCCUCG
.(((-(............))))......((((.(.(((((....)))))).........(((.--.((((((......))))))..)))....))))...... ( -22.10)
>DroEre_CAF1 96365 100 - 1
AGCA-UACGAAAUAUCAAAUGCAAAUGUGGUAAGCAGGCCGCAAGAUUUCAAGACAAACGGCG--AACAGCAAACACCUGUUGCCAGUUAACAUGCCUCCUCG
.(((-(..(((((............((((((......))))))..)))))......((((((.--(((((.......)))))))).)))...))))....... ( -20.94)
>DroPer_CAF1 114265 91 - 1
CGCUUUCAAAAAUAUCAAAUGCAAAUGUGGCAAGCAGACAACAA------------AGCGGCCACAACAGCAAACACCUGUUGCCAGUUAACAUGCCACACAC
.((.................))...(((((((.((.........------------.))(((...(((((.......))))))))........)))))))... ( -19.23)
>consensus
AGCA_UACAAAAUAUCAAAUGCAAAUGUGGCAAGCAGGCCGCAAGGUUUCAAGACAAACGGCA__AACAGCAAACACCUGUUGCCAGUUAACAUGCCUCCUCG
....................(((..((((((......)))))).............((((((...(((((.......)))))))).)))....)))....... (-14.26 = -13.90 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:20 2006