Locus 7636

Sequence ID 3L_DroMel_CAF1
Location 20,550,316 – 20,550,414
Length 98
Max. P 0.771588
window12405

overview

Window 5

Location 20,550,316 – 20,550,414
Length 98
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 94.73
Mean single sequence MFE -27.62
Consensus MFE -26.85
Energy contribution -26.60
Covariance contribution -0.25
Combinations/Pair 1.19
Mean z-score -1.54
Structure conservation index 0.97
SVM decision value 0.53
SVM RNA-class probability 0.771588
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20550316 98 - 23771897
GCAGAAUGCUGGCUAAGCUAAAGCCAGUCAAAAAAUAUUCAAGAGCCAGGCUGGAGAUCUCACAGCUUAAAGAGGCGGUCCCGUCGUAGUGUUAAUUA
.......(((((((.......))))))).....(((((((.......((((((((....)).)))))).....((((....))))).))))))..... ( -25.60)
>DroSec_CAF1 92211 98 - 1
GCAGAAGGCUGGAUAAGCCAAAGCCAGCCAGAAGACAUUCAAGAGCCAGGUAGGAGAUCUCACAGCUUAAAGAGGCGGUCCCGUCGUAGUGUUAAUUA
......((((((...........))))))....(((((((..((((...((..(....)..)).)))).....((((....))))).))))))..... ( -25.60)
>DroSim_CAF1 93714 98 - 1
GCAGAAGGCUGGCUAAGCCAAAGCCAGCCAAAAAACAUUCAAGAGCCAGGUUGGAGAUCUCACAGCUUAAAGAGGCGGUCCCGUCGUAGUGUUAAUUA
......((((((((.......))))))))....(((((((.......((((((((....)).)))))).....((((....))))).))))))..... ( -31.40)
>DroEre_CAF1 94866 98 - 1
GCAGAAGGCUGGCUAAGCCAAAGCCAGUCAAAAAACAUUUAAGAGCCAGGUUGGAGAUCUCACAGCUUAAAGAGGCGGUCCCGUCGUAGUGUUAAUUA
......((((((((.......))))))))....((((((........((((((((....)).)))))).....((((....))))..))))))..... ( -27.90)
>consensus
GCAGAAGGCUGGCUAAGCCAAAGCCAGCCAAAAAACAUUCAAGAGCCAGGUUGGAGAUCUCACAGCUUAAAGAGGCGGUCCCGUCGUAGUGUUAAUUA
......((((((((.......))))))))....(((((((.......((((((((....)).)))))).....((((....))))).))))))..... (-26.85 = -26.60 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:19 2006