Locus 7635

Sequence ID 3L_DroMel_CAF1
Location 20,546,623 – 20,546,720
Length 97
Max. P 0.510889
window12404

overview

Window 4

Location 20,546,623 – 20,546,720
Length 97
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 80.04
Mean single sequence MFE -34.90
Consensus MFE -19.21
Energy contribution -19.72
Covariance contribution 0.50
Combinations/Pair 1.19
Mean z-score -1.81
Structure conservation index 0.55
SVM decision value -0.04
SVM RNA-class probability 0.510889
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20546623 97 - 23771897
----ACAGA-AACUGUUCCAACUGGCUGCCCC---GCCACUUUAUUACGCUGAU------AAGUUGGCGCCUAAUAACGAUAGUGGAUCGAGGGCCUUCUGGGGCAGCAGG
----((((.-..)))).....(((.(((((((---((((.((((((.....)))------))).))))((((.....((((.....)))).)))).....)))))))))). ( -35.80)
>DroPse_CAF1 106026 108 - 1
UGCCACAAAUAACUGUUCCAACUGGUUGCCCCUCUGCCACUUUAUUACGCCAAUGGAAUCAAGUUGGCGCCUAAUAAUAAU---GCUUCGGGGCCGAAGGGGGGCCGAAGG
.(((.....(((((((....)).)))))((((((.(((...(((((((((((((........)))))))..))))))....---.(....)))).).))))))))...... ( -33.00)
>DroSec_CAF1 88461 97 - 1
----ACAGA-AACUGUUCCAACUGGCUGCCCC---GUCACUUUAUUACGCUGAU------AAGUUGGCGCCUAAUAACGAUAGUGGAUCGUGGGGCUUCUGGGGCAGCAGG
----((((.-..)))).....(((.(((((((---((((.((((((.....)))------))).))))((((....(((((.....))))).))))....)))))))))). ( -37.90)
>DroSim_CAF1 89997 96 - 1
----ACAGA-AACUGUUCCAACUGGCUGCCCC---GCCACUUUAUUACGCUGAU------AAGUUGGCGCCUAAUAACGAUAGUGGAUCGUGGGGCUUCUG-GGCAGCAGG
----((((.-..)))).....(((.((((((.---((((.((((((.....)))------))).))))((((....(((((.....))))).))))....)-)))))))). ( -36.40)
>DroEre_CAF1 91066 97 - 1
----ACAGA-AACUGUUCCAACUGGCUGCCCC---GCCACUUUAUUACGCUGAU------AAGUUGGCGCCUAAUAACGAUAGUGGAUCGAGGGGUUUCUAGGGCAGAGGA
----.....-..(((((....((((..(((((---.((((((((((((((..(.------...)..)))..))))))....))))).....)))))..))))))))).... ( -31.00)
>DroPer_CAF1 108216 108 - 1
UGCCACAAAUAACUGUUCCAACUGGUUGCCCCUCUGCCACUUUAUUACGCCAAUGGAAUCAAGUUGGCGCCUAAUAAUAAU---GCUUCGGGGCCGCAGGGGGGCCGAAGG
..((.............((....))..((((((((((....(((((((((((((........)))))))..))))))....---(((....))).))))))))))....)) ( -35.30)
>consensus
____ACAGA_AACUGUUCCAACUGGCUGCCCC___GCCACUUUAUUACGCUGAU______AAGUUGGCGCCUAAUAACGAUAGUGGAUCGAGGGCCUUCUGGGGCAGAAGG
....((((....)))).....((..(((((((....((...(((((((((((((........)))))))..))))))((((.....)))).)).......))))))).)). (-19.21 = -19.72 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:17 2006