Locus 7633

Sequence ID 3L_DroMel_CAF1
Location 20,544,024 – 20,544,141
Length 117
Max. P 0.830941
window12401

overview

Window 1

Location 20,544,024 – 20,544,141
Length 117
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 93.34
Mean single sequence MFE -29.23
Consensus MFE -28.08
Energy contribution -27.97
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -1.03
Structure conservation index 0.96
SVM decision value 0.71
SVM RNA-class probability 0.830941
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20544024 117 + 23771897
-UUGGCUUUUUGGCCAUAGCGUCUCGACGCCGGGCAGACUAUUAACUUUGAAAGUUGUUUAAACAGGCGAAGAGCCAAGAGGCAAACCUCCACCUUCUCUAUUUCUUAUUU-UUUCCUG
-((((((((((((((...((((....))))..))).((((.(((....))).))))...........)))))))))))((((....)))).....................-....... ( -31.00)
>DroPse_CAF1 103376 115 + 1
UGCGGUUUUUCGGCCAAAACGUCUCGACGCCGGGCAGACUAUUAACUUUGAAAGUUGUUUAAACAGGCGAAGAGCCAAGAGGCGAACCUCCACCUUC--UAUUUCUUUUUUUU-UUUU-
...(((((((((.((.....(((.((....))))).((((.(((....))).)))).........)))))))))))..((((....)))).......--..............-....- ( -25.70)
>DroSec_CAF1 85966 116 + 1
-UUGGCUUUUUGGCCAUAGCGUCUCGACGCCGGGCAGACUAUUAACUUUGAAAGUUGUUUAAACAGGCGAAGAGCCAAGAGGCAAACCUCCACCUUC--UAUUUCUUAUUUUUUUCCUG
-((((((((((((((...((((....))))..))).((((.(((....))).))))...........)))))))))))((((....)))).......--.................... ( -31.00)
>DroSim_CAF1 86157 116 + 1
-UUGGCUUUUUGGCCAUAGCGUCUCGACGCCGGGCAGACUAUUAACUUUGAAAGUUGUUUAAACAGGCGAAGAGCCAAGAGGCAAACCUCCACCUUC--UAUUUCUUAUUUUUUUCCUG
-((((((((((((((...((((....))))..))).((((.(((....))).))))...........)))))))))))((((....)))).......--.................... ( -31.00)
>DroEre_CAF1 88558 116 + 1
-UUGGCUUUUUGGCCAAAGCGUCUCGACGCCGGGCAGACUAUUAACUUUGAAAGUUGUUUAAACAGGCGAAGAGCCAAGAGGCAAACCUCCACCUUC--UAUUUCUUAUUUUUUUCCUG
-((((((((((((((...((((....))))..))).((((.(((....))).))))...........)))))))))))((((....)))).......--.................... ( -31.00)
>DroPer_CAF1 105452 116 + 1
UGCGGUUUUUCGGCCAAAACGUCUCGACGCCGGGCAGACUAUUAACUUUGAAAGUUGUUUAAACAGGCGAAGAGCCAAGAGGCGAACCUCCACCUUC--UAUUUCUUUUUUUUUUUUU-
...(((((((((.((.....(((.((....))))).((((.(((....))).)))).........)))))))))))..((((....)))).......--...................- ( -25.70)
>consensus
_UUGGCUUUUUGGCCAAAGCGUCUCGACGCCGGGCAGACUAUUAACUUUGAAAGUUGUUUAAACAGGCGAAGAGCCAAGAGGCAAACCUCCACCUUC__UAUUUCUUAUUUUUUUCCUG
...((((((((((((...((((....))))..))).((((.(((....))).))))...........)))))))))..((((....))))............................. (-28.08 = -27.97 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:09 2006