| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,543,226 – 20,543,330 |
| Length | 104 |
| Max. P | 0.585853 |
| Location | 20,543,226 – 20,543,330 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 91.64 |
| Mean single sequence MFE | -23.70 |
| Consensus MFE | -17.58 |
| Energy contribution | -18.70 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.585853 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20543226 104 - 23771897 CAAAUUUUACACAAUUGUAUAUUCGUAAUCCAGUGUCUAAUUCUAGCUUGACAGUUCAAGGCUACAGAUAGCUGACAAUUUUCAGACAACCCAGUCAGCAAUCU ..((((..((((.....(((....))).....))))..)))).((((((((....)))).)))).((((.((((((.................)))))).)))) ( -19.13) >DroSec_CAF1 85259 103 - 1 UAGAUUUUACACGAUUUGAUAUUCUUAAGCCCGUGUCUAAU-CUAGCCUGACAGUUCAAGGCUAAAGCUAGCUGACAAUUUUCAGACAACCCAGUCAGCAAUCU ..((((..(((((.(((((.....)))))..)))))..)))-)((((((((....)).))))))......((((((.................))))))..... ( -25.53) >DroSim_CAF1 85450 103 - 1 UAGAUUUUACACGACUUUAUAUUCUUAAGCCCGUGUCUAAU-CUAGCCUGACAGUUCAAGGCUACAGCUAGCUGACAAUUUUCAGACAACCCAGUCAGCAAUCU ((((((..(((((..((((......))))..)))))..)))-)))((((((....)).))))........((((((.................))))))..... ( -26.43) >consensus UAGAUUUUACACGAUUUUAUAUUCUUAAGCCCGUGUCUAAU_CUAGCCUGACAGUUCAAGGCUACAGCUAGCUGACAAUUUUCAGACAACCCAGUCAGCAAUCU ...(((..(((((..((((......))))..)))))..)))..((((((((....)).))))))......((((((.................))))))..... (-17.58 = -18.70 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:08 2006