Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,542,558 – 20,542,657 |
Length | 99 |
Max. P | 0.817292 |
Location | 20,542,558 – 20,542,657 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 76.62 |
Mean single sequence MFE | -27.05 |
Consensus MFE | -13.34 |
Energy contribution | -13.45 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -2.08 |
Structure conservation index | 0.49 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.817292 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20542558 99 + 23771897 ----AGUUGCUGUUGCCUAGUUGUUGGCUGCCAGCCACACGUUCACUGAUCGCUGUGGCAUUUGUUACAAUUUUAAAUGUUAGCUCAGGCAAAA------GCG-AGGCAA ----..(((((.((((((.(..((((((.....((((((((.((...)).)).))))))(((((.........))))))))))).))))))).)------)))-)..... ( -30.20) >DroPse_CAF1 102092 81 + 1 -----------------------UUGGCUGCCAGCCACACGUUCACCGAUCGCUGUGGCAUUUGUUACAAUUUUAAAUGUUAGCAAAAGCAAAG------CCAAAAGCAA -----------------------((((((((..((((((((.((...)).)).)))))).(((((((((........)).))))))).))..))------))))...... ( -24.20) >DroSec_CAF1 84591 99 + 1 ----AGUUGCUGUUGCCUAGUUGUUGGCUGCCAGCCACACGUUCACUGAUCACUGUGGCAUUUGUUACAAUUUUAAAUGUUAGCUCAGGCAAAA------GCG-AGGCAA ----..(((((.(((((((((((.((((.....)))).(((((....(((...((((((....)))))))))...)))))))))).)))))).)------)))-)..... ( -28.40) >DroEre_CAF1 87130 99 + 1 ----AGUUGCUGUUGCCUAGUUGUUGGCUGCCAGCCACACGUUCACUGAUCGCUGUGGCAUUUGUUACAAUUUUAAAUGUUAGCUCAGGCAAAA------GCG-AGGCAA ----..(((((.((((((.(..((((((.....((((((((.((...)).)).))))))(((((.........))))))))))).))))))).)------)))-)..... ( -30.20) >DroMoj_CAF1 95822 87 + 1 ACUUGGCUG--------------UUGGCUUGGAGCCACACGUUCGCCAAGCUCUGUGGCAUUUGUUACAAUUUUAAAUGUUAGCUUAGGCAAAA-------CG-AGACA- .((((((((--------------(.(((.....)))))).))..((((((((....((((((((.........))))))))))))).)))....-------))-))...- ( -24.40) >DroPer_CAF1 104012 87 + 1 -----------------------UUGGCUGCCAGCCACACGUUCACCGAUCGCUGUGGCAUUUGUUACAAUUUUAAAUGUUAGCAAAAGCAAAGCCAAAGCCAAAAGCAA -----------------------((((((((..((((((((.((...)).)).)))))).(((((((((........)).))))))).))..)))))).((.....)).. ( -24.90) >consensus ____AGUUG______________UUGGCUGCCAGCCACACGUUCACCGAUCGCUGUGGCAUUUGUUACAAUUUUAAAUGUUAGCUCAGGCAAAA______GCG_AGGCAA ..........................(((....((((((((.........)).))))))....((((((........)).))))...))).................... (-13.34 = -13.45 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:07 2006