| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,538,497 – 20,538,613 |
| Length | 116 |
| Max. P | 0.829416 |
| Location | 20,538,497 – 20,538,613 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.60 |
| Mean single sequence MFE | -17.53 |
| Consensus MFE | -12.59 |
| Energy contribution | -12.37 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.829416 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20538497 116 - 23771897 AAAACUGUAUAAUUGUAUGUCUAAUGCGGAAGCUCUUGCAAUUUAGUUGCAAUACAACUUUUU-UCACAAA--CAAGACGAAUAUUUCAGGGUUAUAUUUUAUACUAACCUUUAACUAA ....(((......(((.(((((...((....))..(((((((...)))))))...........-.......--..))))).)))...)))(((((..........)))))......... ( -19.20) >DroSec_CAF1 80582 99 - 1 ----CUGUAUAAUUGUAUGCCUAAUGCGGAAGCUCUUGCCAUUUAGUUGCUAUACAACUUUUCUUAACAAACACAAG----------------UAUAUUUUAUACCAAACUUAAACUAA ----..((((((..((((((.....((....))...........(((((.....))))).................)----------------))))).)))))).............. ( -15.40) >DroSim_CAF1 80731 97 - 1 ----CUGUAUAAUUGUAUACCUAAUGCGGAAGCUCUUGCAAUUUAGUUGCAAUACAACUUUUCAUAACAAA--CAAG----------------UAUAUUUUAUACUAAACUUAAACUAA ----..((((((..((((((.....((....))..(((((((...)))))))...................--...)----------------))))).)))))).............. ( -18.00) >consensus ____CUGUAUAAUUGUAUGCCUAAUGCGGAAGCUCUUGCAAUUUAGUUGCAAUACAACUUUUC_UAACAAA__CAAG________________UAUAUUUUAUACUAAACUUAAACUAA ......((((((..(((((......((....))...........(((((.....)))))..................................))))).)))))).............. (-12.59 = -12.37 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:06 2006