Locus 763

Sequence ID	3L_DroMel_CAF1
Location	2,271,635 – 2,271,738
Length	103
Max. P	0.999773

overview

Window 7

Location	2,271,635 – 2,271,738
Length	103
Sequences	5
Columns	106
Reading direction	forward
Mean pairwise identity	92.90
Mean single sequence MFE	-25.76
Consensus MFE	-21.98
Energy contribution	-22.74
Covariance contribution	0.76
Combinations/Pair	1.05
Mean z-score	-2.32
Structure conservation index	0.85
SVM decision value	2.71
SVM RNA-class probability	0.996527
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2271635 103 + 23771897
CAAAUCAUUCCGUGAGUCAUGCUGCAAAAAGCUACAUCUUGUGCACGGAGCAAAAUAA---AGUGUUUGCUAAGUGCAAGUCACGGAUAAAAAUUAUUAUAUUGUA
........(((((((((...(((......))).))......(((((..((((((....---....))))))..)))))..)))))))................... ( -28.30)
>DroSec_CAF1 21322 103 + 1
CAAAUCAUUCCGUGAGUCAUGCUGCAAAAAGCUACAGCUUGUGCACGGAGCAAAACAA---AGUGUUUGCUAUGUGCAAGUCACGGAUAAAAAUUAUUAUAUUGUA
........(((((((..((.((((..........)))).))((((((.((((((....---....)))))).))))))..)))))))................... ( -29.00)
>DroSim_CAF1 21468 103 + 1
CAAAUCAUUCCGUGAGUCAUGCUGCAAAAAGCUACAGCUUGUGCACGGAGCAAAACAA---AGUGUUUGCUAUGUGCAAGUCACGGAUAAAAAUUAUUAUAUUGUA
........(((((((..((.((((..........)))).))((((((.((((((....---....)))))).))))))..)))))))................... ( -29.00)
>DroEre_CAF1 24055 103 + 1
CAAAUCAUUCUGUGAGUCAUGCUGCAAAAAGCUAUAACUUGUGCACGGAGCAAAAGAA---AGAGUUUGGCAUGUGCAAGUCACGAAUAAAAAUUAUUAUAUUGUU
......((((.((((.(..((((((...(((((....(((.(((.....))).)))..---..))))).))).)))..).)))))))).................. ( -20.20)
>DroYak_CAF1 22178 106 + 1
CAAAUCAUUCUGUGAGUCAUGCUGCAAAAAGCUACAACUUGUGCACGGAGCAAAAGAAGAAGGUGUUUGCUAUGUGCAAGUCACGAAUAAAAAUUAUUAUAUUGCU
......((((.((((((...(((......))).))..((((..((...((((((...........)))))).))..)))))))))))).................. ( -22.30)
>consensus
CAAAUCAUUCCGUGAGUCAUGCUGCAAAAAGCUACAACUUGUGCACGGAGCAAAACAA___AGUGUUUGCUAUGUGCAAGUCACGGAUAAAAAUUAUUAUAUUGUA
........(((((((.....(((......))).........((((((.((((((...........)))))).))))))..)))))))................... (-21.98 = -22.74 +   0.76)

alignment

secondary structure

dotplot

Window 8

Location	2,271,635 – 2,271,738
Length	103
Sequences	5
Columns	106
Reading direction	reverse
Mean pairwise identity	92.90
Mean single sequence MFE	-27.36
Consensus MFE	-23.52
Energy contribution	-23.96
Covariance contribution	0.44
Combinations/Pair	1.11
Mean z-score	-3.29
Structure conservation index	0.86
SVM decision value	4.05
SVM RNA-class probability	0.999773
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2271635 103 - 23771897
UACAAUAUAAUAAUUUUUAUCCGUGACUUGCACUUAGCAAACACU---UUAUUUUGCUCCGUGCACAAGAUGUAGCUUUUUGCAGCAUGACUCACGGAAUGAUUUG
...................(((((((..(((((..((((((....---....))))))..)))))....((((.((.....)).))))...)))))))........ ( -28.10)
>DroSec_CAF1 21322 103 - 1
UACAAUAUAAUAAUUUUUAUCCGUGACUUGCACAUAGCAAACACU---UUGUUUUGCUCCGUGCACAAGCUGUAGCUUUUUGCAGCAUGACUCACGGAAUGAUUUG
...................(((((((..(((((..((((((....---....))))))..)))))((.(((((((....))))))).))..)))))))........ ( -31.70)
>DroSim_CAF1 21468 103 - 1
UACAAUAUAAUAAUUUUUAUCCGUGACUUGCACAUAGCAAACACU---UUGUUUUGCUCCGUGCACAAGCUGUAGCUUUUUGCAGCAUGACUCACGGAAUGAUUUG
...................(((((((..(((((..((((((....---....))))))..)))))((.(((((((....))))))).))..)))))))........ ( -31.70)
>DroEre_CAF1 24055 103 - 1
AACAAUAUAAUAAUUUUUAUUCGUGACUUGCACAUGCCAAACUCU---UUCUUUUGCUCCGUGCACAAGUUAUAGCUUUUUGCAGCAUGACUCACAGAAUGAUUUG
................((((((((((..(((((..((.(((....---...))).))...)))))...(((((.(((......)))))))))))).)))))).... ( -20.10)
>DroYak_CAF1 22178 106 - 1
AGCAAUAUAAUAAUUUUUAUUCGUGACUUGCACAUAGCAAACACCUUCUUCUUUUGCUCCGUGCACAAGUUGUAGCUUUUUGCAGCAUGACUCACAGAAUGAUUUG
................((((((((((..(((((..((((((...........))))))..)))))((.(((((((....))))))).))..)))).)))))).... ( -25.20)
>consensus
UACAAUAUAAUAAUUUUUAUCCGUGACUUGCACAUAGCAAACACU___UUCUUUUGCUCCGUGCACAAGCUGUAGCUUUUUGCAGCAUGACUCACGGAAUGAUUUG
...................(((((((..(((((..((((((...........))))))..)))))((.(((((((....))))))).))..)))))))........ (-23.52 = -23.96 +   0.44)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:39 2006