| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,533,967 – 20,534,058 |
| Length | 91 |
| Max. P | 0.840461 |
| Location | 20,533,967 – 20,534,058 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 54.61 |
| Mean single sequence MFE | -22.30 |
| Consensus MFE | -11.00 |
| Energy contribution | -10.12 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.840461 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20533967 91 - 23771897 ----CUCUGCUCGGUUGUAGGUGGACUUAACAGACACUUGAAGUGGGUACAAUGGAAUACUUAAGGAGUUUGGAGUAGAAUAUACGGCUUACAUU ----.(((((((.....((((....)))).(((((.(((.(((((..(......)..))))).))).))))))))))))................ ( -20.50) >DroPse_CAF1 92664 87 - 1 GCCAUCUAGGGAGAGAUCCCAGCAAAGGAAAGCCCUCUA--GAUAG----GG-AAAAUGGGGGAUUAGGAUUAGACCCAG-UUGAAAGACGAACC .((((((((((.(...(((.......)))...).)))))--))).)----).-....((((.(((....)))...))))(-((....)))..... ( -22.60) >DroSec_CAF1 76005 83 - 1 ----CUCUGCUCCGUUGUGGGUGGACUUAACAGACACUUGAAGUGG--------GAAUACUUAAGGAGUUUGGAGUAGAAUAUACGGAUUAUAUA ----.((((((((((((.(......).))))((((.(((.(((((.--------...))))).))).))))))))))))................ ( -22.00) >DroSim_CAF1 76153 91 - 1 ----CUCUGCUCCGUUGUGGGUGGACUCAACAGACACUUGAAGUGGGUACAAUGGAAUACUUAAGGAGUUUGGAGUAGAAUAUACGGAUCAUAUU ----.((((((((((((.(......).))))((((.(((.(((((..(......)..))))).))).))))))))))))................ ( -24.10) >consensus ____CUCUGCUCCGUUGUGGGUGGACUUAACAGACACUUGAAGUGG____AA_GGAAUACUUAAGGAGUUUGGAGUAGAAUAUACGGAUCAUAUU ....(((((((((....((((((...........(((.....)))............)))))).)))))..)))).................... (-11.00 = -10.12 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:05 2006