Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,528,503 – 20,528,623 |
Length | 120 |
Max. P | 0.990986 |
Location | 20,528,503 – 20,528,623 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.47 |
Mean single sequence MFE | -41.72 |
Consensus MFE | -37.92 |
Energy contribution | -39.55 |
Covariance contribution | 1.63 |
Combinations/Pair | 1.06 |
Mean z-score | -2.50 |
Structure conservation index | 0.91 |
SVM decision value | 2.24 |
SVM RNA-class probability | 0.990986 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20528503 120 + 23771897 CACAUCCACAUCCACAUCCAUAUUGCCUCACUCCGCGGGUAUCUAACAUAGUACGAUGUUGUGGCAUCCAUCUGGGAGUGUGGCAUCCAGCGCGGUGGAGACAUUUAUCGCGCGUUGGUG ........((((.((........((((.((((((.(((((((........))))(((((....)))))...))))))))).))))....((((((((((....)))))))))))).)))) ( -45.40) >DroSec_CAF1 70717 108 + 1 CA------------CAUCCAUAUUGCCACACUCCACGGGUAUCUAACAUAGUACGAUGUUGUGGCAUCCAUCUGGGAGUGUGGCAUCCAGCGCAGUGGAGACAUUUAUCGCGCGUUGGUG ..------------.........(((((((((((.(((((((........))))(((((....)))))...)))))))))))))).(((((((((((....))))......))))))).. ( -44.70) >DroSim_CAF1 70820 114 + 1 CACAU------CCACAUCCAUAUUGCCACACUCCACGGGUAUCUAACAUAGUACGAUGUUGUGGCAUCCAUCUGGGAGUGUGGCAUCCAGCGCAGUGGAGACAUUUAUCGCGCGUUGGUG ..(((------(.((........(((((((((((.(((((((........))))(((((....)))))...))))))))))))))....((((((((....))))....)))))).)))) ( -45.60) >DroEre_CAF1 73299 103 + 1 CAGAU------CCACAUCCAUAUCGCCAUGCUCCACGGGUAUCU-----GGUACGAUGUUGUGGCAUCCAUCUGGGAGU------UCCAGCGCACUGGAGACAUUUAUCGCGCGUUGGUG (((((------(((((...(((((((((((((.....))))..)-----))..))))))))))).....))))).....------.(((((((.(((....))......).))))))).. ( -31.20) >consensus CACAU______CCACAUCCAUAUUGCCACACUCCACGGGUAUCUAACAUAGUACGAUGUUGUGGCAUCCAUCUGGGAGUGUGGCAUCCAGCGCAGUGGAGACAUUUAUCGCGCGUUGGUG .......................(((((((((((.(((((((........))))(((((....)))))...)))))))))))))).(((((((((((....))))......))))))).. (-37.92 = -39.55 + 1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:03 2006