Locus 7624

Sequence ID 3L_DroMel_CAF1
Location 20,520,237 – 20,520,345
Length 108
Max. P 0.529818
window12388

overview

Window 8

Location 20,520,237 – 20,520,345
Length 108
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 88.14
Mean single sequence MFE -27.27
Consensus MFE -22.70
Energy contribution -22.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.83
SVM decision value -0.01
SVM RNA-class probability 0.529818
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20520237 108 + 23771897
--GUUUUCUC----------GCUCACAGAGUCAACUUUGGCAUGACUUUUCAUCGCUGUCGAUUGUCGUGAUCAAUUGAGAGCAAUUUAUUAUGAAAUGAGGGUGAAUUAUAUGAAUGAG
--.....(((----------(.((((((((....))))).........(((((((((.(((((((.......))))))).)))..((((((....)))))))))))).....))).)))) ( -27.50)
>DroVir_CAF1 69598 119 + 1
AUGUUUCGCCGGUUUCUACCGAUC-CAGAGUCAACUUUGGCAUGACUUUUCAUCGCUGUCGAUUGUCGUGAUCAAUUGAGAGCAAUUUAUUAUGAAAUGAGGGUGAAUUAUAUGAAUGAG
.........((((....))))..(-(((((....))))))((((....(((((((((.(((((((.......))))))).)))..((((((....))))))))))))...))))...... ( -31.30)
>DroPse_CAF1 75977 94 + 1
--------------------------AGAGUCAACUUUGGCAUGACUUUUCAUCGCUGUCGAUUGUCGUGAUCAAUUGAGAGCAAUUUAUUAUGAAAUGAGGGUGAAUUAUAUGAAUGAG
--------------------------.((((((.........))))))(((((((((.(((((((.......))))))).)))..((((((....))))))))))))............. ( -22.70)
>DroMoj_CAF1 71298 109 + 1
AUGUUUCGCC----------GAUC-CAGAGUCAACUUUGGCAUGACUUUUCAUCGCUGUCGAUUGUCGUGAUCAAUUGAGAGCAAUUUAUUAUGAAAUGAGGGUGAAUUAUAUGAAUGAG
(((.((((((----------(((.-.(((((((.........)))))))..)))(((.(((((((.......))))))).)))..................)))))).)))......... ( -28.20)
>DroAna_CAF1 60235 108 + 1
--GUUUUCUC----------GCUCGAAGAGUCAACUUUGGCAUGACUUUUCAUCGCUGUCGAUUGUCGUGAUCAAUUGAGAGCAAUUUAUUAUGAAAUGAGGGUGAAUUAUAUGAAUGAG
--.....(((----------(.(((((((((((.........))))))))).(((((.(((....(((((((.(((((....))))).)))))))..))).))))).......)).)))) ( -31.20)
>DroPer_CAF1 74090 94 + 1
--------------------------AGAGUCAACUUUGGCAUGACUUUUCAUCGCUGUCGAUUGUCGUGAUCAAUUGAGAGCAAUUUAUUAUGAAAUGAGGGUGAAUUAUAUGAAUGAG
--------------------------.((((((.........))))))(((((((((.(((((((.......))))))).)))..((((((....))))))))))))............. ( -22.70)
>consensus
__GUUU___C__________G_UC_CAGAGUCAACUUUGGCAUGACUUUUCAUCGCUGUCGAUUGUCGUGAUCAAUUGAGAGCAAUUUAUUAUGAAAUGAGGGUGAAUUAUAUGAAUGAG
...........................((((((.........))))))(((((((((.(((((((.......))))))).)))..((((((....))))))))))))............. (-22.70 = -22.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:56 2006