Locus 7623

Sequence ID 3L_DroMel_CAF1
Location 20,515,191 – 20,515,289
Length 98
Max. P 0.609259
window12387

overview

Window 7

Location 20,515,191 – 20,515,289
Length 98
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 80.28
Mean single sequence MFE -32.03
Consensus MFE -17.10
Energy contribution -17.43
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.07
Structure conservation index 0.53
SVM decision value 0.15
SVM RNA-class probability 0.609259
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20515191 98 - 23771897
AAUAAAUUGCACGCAAUCAACCUGCGCGCUUAGCUCCAUUUAAGCGAGUCUGAGCGAGUAAAUC--UUGGUCAGC--GCUG-GCUGGGAUCUCCAGAUC-------U--UAC
........((.((((.......)))).)).............(((.(((((((.((((.....)--))).)))).--))).-)))((((((....))))-------)--).. ( -30.10)
>DroPse_CAF1 70370 110 - 1
AAUAAAUUGCACGCAAUCAACUUGCGCGCUUAGCUCCAUUUAAGUGAGACUGAGCGAGUAAAUCUCUUGGCCAGAGCGCAGAGCAC--AGCUCCACAGCUCCACGGCUCCAC
......((((.(((((.....)))))(((((((((((......).))).))))))).)))).......((((.((((...((((..--.))))....))))...)))).... ( -34.40)
>DroSec_CAF1 57829 107 - 1
AAUAAAUUGCACGCAAUCAACCUGCGCGCUUAGCUCCAUUUAAGCGAGUCUGAGCGAGUAAAUC--UUGGCCAGCGCGCUG-GCUGGGAUCUCCAGAUCGCGAAGCU--UAC
........((.(((.(((....(((.(((((((((((......).))).))))))).))).(((--(..(((((....)))-))..)))).....))).)))..)).--... ( -40.50)
>DroSim_CAF1 57991 107 - 1
AAUAAAUUGCACGCAAUCAACCUGCGCGCUUAGCUCCAUUUAAGCGAGUCUGAGCGAGUAAAUC--UUGGCCAGCGCGCUG-GCUGGGAUCUCCAGAUCUCGAAGCU--UAC
........((.((..(((....(((.(((((((((((......).))).))))))).))).(((--(..(((((....)))-))..)))).....)))..))..)).--... ( -36.70)
>DroAna_CAF1 55527 87 - 1
AAUAAAUUGCACGCAAUCAACUUGCGCGCUUAGCUCCAUUUAAGCCAGCCCGAGCGAGUAAAUC--UUGGCCAGA--GU------------UUCAG-------AGCU--CAC
........((.(((((.....))))).))..(((((.((((..((((((....))((.....))--.))))..))--))------------....)-------))))--... ( -20.50)
>DroPer_CAF1 68447 108 - 1
AAUAAAUUGCACGCAAUCAACUUGCGCGCUUAGCUCCAUUUAAGUGAGACUGAGCGAGUAAAUCUCUUGGCCAGAGAGCU--CCAC--AGCUCCACAGCUCCACGGCUCCAC
......((((.(((((.....)))))(((((((((((......).))).))))))).)))).......((((...(((((--....--........)))))...)))).... ( -30.00)
>consensus
AAUAAAUUGCACGCAAUCAACCUGCGCGCUUAGCUCCAUUUAAGCGAGUCUGAGCGAGUAAAUC__UUGGCCAGAGCGCUG_GCUG__AUCUCCAGAUCUC_AAGCU__CAC
......((((.((((.......))))(((((((((((......).))).))))))).))))................................................... (-17.10 = -17.43 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:55 2006