Locus 7622

Sequence ID 3L_DroMel_CAF1
Location 20,514,336 – 20,514,430
Length 94
Max. P 0.792804
window12386

overview

Window 6

Location 20,514,336 – 20,514,430
Length 94
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 79.64
Mean single sequence MFE -29.39
Consensus MFE -19.74
Energy contribution -19.58
Covariance contribution -0.16
Combinations/Pair 1.36
Mean z-score -1.82
Structure conservation index 0.67
SVM decision value 0.59
SVM RNA-class probability 0.792804
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20514336 94 + 23771897
GCUGGGCCCCGAAGCUCGG----CUCAACUCACGGUGCCACA-----CACAUCUCAGAC----UUUCAGACUUCUAA-AA----AACCUGGGAUUUUGGGCUCGGCGAUGAC
(((((((((.(((....((----(.(........).)))...-----....((((((..----(((.((....)).)-))----...))))))))).)))))))))...... ( -30.40)
>DroSec_CAF1 56989 94 + 1
GCUGGGCCCCGAAGCUUGG----CUCAACUCACUGUGCCACA-----CACAUCUCAGAC----UUUCAGACUUCUAA-AA----AACCUGGGAUUUUGGGCUCGGCGAUGAC
(((((((((.((((..(((----(.((......)).))))..-----)...((((((..----(((.((....)).)-))----...))))))))).)))))))))...... ( -32.20)
>DroSim_CAF1 57186 93 + 1
GCUG-GCCCCGAAGCUCGG----CUCAACUCACUGUGCCACA-----CACAUCUCAGAC----UUUCAGACUUUUAA-AA----AACUUGGGAUUUUGGGCUCGGCGAUGAC
((((-..((((((....((----(.((......)).)))...-----...(((((((..----..............-..----...)))))))))))))..))))...... ( -24.30)
>DroEre_CAF1 59248 100 + 1
GCUGGGCCCCGGCACUCAG----CUCAACUCACUGUGCCACACACCACACAUCUCAGAC----UUUCAGACUUUUAAGAA----AACCUGAGAUUUUGGGCUCGGCGAUGAC
(((((((((.(((((....----...........)))))...........(((((((..----((((..........)))----)..)))))))...)))))))))...... ( -36.06)
>DroAna_CAF1 54540 103 + 1
GCUGGGCUCCACUGCAAAUCCCCAACAACUCACUGUGCCACA-----CAC---UCAGACCCACCAUCAGACGUGCAC-CAUUUGAGACUCUGUUUUUGGGCUCGGCGAUGAC
(((((((.(((..(((.................((((...))-----))(---(((((..(((........)))...-..))))))....)))...))))))))))...... ( -24.00)
>consensus
GCUGGGCCCCGAAGCUCGG____CUCAACUCACUGUGCCACA_____CACAUCUCAGAC____UUUCAGACUUCUAA_AA____AACCUGGGAUUUUGGGCUCGGCGAUGAC
(((((((((.(((.(((((...............(((..........)))......((.......))....................))))).))).)))))))))...... (-19.74 = -19.58 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:54 2006