| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,513,189 – 20,513,286 |
| Length | 97 |
| Max. P | 0.618344 |
| Location | 20,513,189 – 20,513,286 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.93 |
| Mean single sequence MFE | -30.50 |
| Consensus MFE | -18.77 |
| Energy contribution | -19.13 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.618344 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20513189 97 - 23771897 ------UCCUAGU--------CCGGGUCUUGGCCCGG---GCACAUUCCAAACUCGAACUAGACAAAUAUUGAUGGCCGCUCAUCAAUAGCCGCAGCAGCAGCACCACCAACAC------ ------.....((--------((((((....))))))---)).........................(((((((((....)))))))))((.((....)).))...........------ ( -28.70) >DroPse_CAF1 68377 107 - 1 ---------GAGUC----UCGCCGGGUCUUGGCCCGCGUUGCACAUUCCACACUCGAACUAGACAAAUAUUGAUGGCCGCUCAUCAAUAGCCGCAGCGCUGCAGCGGUGCAGCGGUGCAA ---------..((.----.(((.((((....)))))))..)).........................(((((((((....)))))))))...(((.(((((((....))))))).))).. ( -39.50) >DroSec_CAF1 55872 97 - 1 ------UCCUAGU--------CCGGGUCUUGGCCCGG---GCACAUUCCAAACGCGAACUAGACAAAUAUUGAUGGCCGCUCAUCAAUAGCCGCAGCAGCACCACCACCAACAC------ ------.....((--------((((((....))))))---))...........((............(((((((((....)))))))))((....)).))..............------ ( -27.90) >DroSim_CAF1 56058 97 - 1 ------UCCUAGU--------CCGGGUCUUGGCCCGG---GCACAUUCCAAACGCGAACUAGACAAAUAUUGAUGGCCGCUCAUCAAUAGCCGCAGCAGCAGCACCACCAACAC------ ------.....((--------((((((....))))))---)).........................(((((((((....)))))))))((.((....)).))...........------ ( -28.70) >DroEre_CAF1 58130 104 - 1 ------UCCUAGUCUUCUUCUCCGGGUCUUGGCCCGG---GCACAUUCCAAACUCGAACUAGACAAAUAUUGAUGGCCGCUCAUCAAUAGCCGCGGC-GCAGCACCACCAACAC------ ------.....((((..((((((((((....))))))---)..............)))..))))...(((((((((....)))))))))((....))-................------ ( -27.23) >DroAna_CAF1 53367 105 - 1 UCCAUGUCCGAGU--------CCGGGUCUCGGCCCGG---GCACAUUCCAAACCCGAACUAGACAAAUAUUGAUGGCCGCUCAUCAAUAGACACAGCGGCAGCACCACCAAUACCC---- ....((((...((--------((((((....))))))---))...(((.......)))...))))..(((((.((((((((..((....))...)))))).....)).)))))...---- ( -31.00) >consensus ______UCCUAGU________CCGGGUCUUGGCCCGG___GCACAUUCCAAACUCGAACUAGACAAAUAUUGAUGGCCGCUCAUCAAUAGCCGCAGCAGCAGCACCACCAACAC______ .....................((((((....))))))...((.........................(((((((((....)))))))))((....)).)).................... (-18.77 = -19.13 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:53 2006