| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,512,299 – 20,512,397 |
| Length | 98 |
| Max. P | 0.536787 |
| Location | 20,512,299 – 20,512,397 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 71.54 |
| Mean single sequence MFE | -22.25 |
| Consensus MFE | -3.98 |
| Energy contribution | -5.18 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.18 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.536787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20512299 98 + 23771897 ---------GCCACCUAUAU---CUUCGUUGGCUGCAGUCG---CAGUCGAUGCAG-UUGAUGCACAAAAU------AUAUAUAUCGCUGUGUAUAUAUAUUUUCGCUCAUUACUCGAGC ---------...........---...(((..((((((.(((---....))))))))-)..)))...(((((------((((((((......))))))))))))).((((.......)))) ( -27.40) >DroSec_CAF1 55022 89 + 1 ---------GCCCCCUAUAU---CUUCGGUCGCUGCAGUCG---CAGUC----------GAUGCACAAAAU------AUAUAUAUCGCUGUGUAUAUAUAUUUUCGCUCAUUACUCGAGC ---------...........---.((((((((((((....)---))).)----------)))((..(((((------((((((((......))))))))))))).))........)))). ( -22.10) >DroSim_CAF1 55196 98 + 1 ---------GCCCCCUAUAU---CUUCGGUCGCUGCAGUCG---CAGUCGAUGCAG-UCGAUGCACAAAAU------AUAUAUAUCGCUGUGUAUAUAUAUUUUCGCUCAUUACUCGAGC ---------...........---.(((((((((((((.(((---....))))))))-.))))((..(((((------((((((((......))))))))))))).))........)))). ( -25.30) >DroEre_CAF1 57231 90 + 1 ----------------AUAU---CUGCGACCGAUGCAGUCGAUGCAGUCGAUGCAG-UUGAUGCACAGAAU------AUAUA----GCUGUGUAUAUAUAUUUUCGCUCAUUACUCGAGC ----------------....---(((((..(((((((.....)))).))).)))))-...((((((((...------.....----.))))))))..........((((.......)))) ( -24.30) >DroAna_CAF1 52411 109 + 1 CUCCCUGCCGCGGCCCAUAUACCCCUCUGCCUCUGCC-UCU---CAUUUGUUGCAACUUGUUGCACAAAAUCCGUUUAUAUAUAUA-----GUAUCU-UUUUUUCGCUCAUUACAAGUG- ......((.(.(((..............))).).)).-...---..(((((.((((....))))))))).................-----......-......((((.......))))- ( -12.14) >consensus _________GCCCCCUAUAU___CUUCGGUCGCUGCAGUCG___CAGUCGAUGCAG_UUGAUGCACAAAAU______AUAUAUAUCGCUGUGUAUAUAUAUUUUCGCUCAUUACUCGAGC ............................................................(((((((.....................)))))))..........((((.......)))) ( -3.98 = -5.18 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:52 2006