Locus 762

Sequence ID 3L_DroMel_CAF1
Location 2,266,232 – 2,266,331
Length 99
Max. P 0.946260
window1176

overview

Window 6

Location 2,266,232 – 2,266,331
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 77.85
Mean single sequence MFE -36.35
Consensus MFE -17.29
Energy contribution -18.60
Covariance contribution 1.31
Combinations/Pair 1.13
Mean z-score -2.65
Structure conservation index 0.48
SVM decision value 1.36
SVM RNA-class probability 0.946260
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2266232 99 + 23771897
UUUCGCUGGCUUUUCCGAACAGCUGAUUCAACGCUGUCGCUGCCGGCGUCGACGCCAGAAAGCUGGCAACACUUUCGACAGGCGCGCAGGAAAAGCCGA
......((((((((((((.((((.........))))))((((((((((....)))).(((((.((....)))))))....)))).)).)))))))))). ( -46.20)
>DroPse_CAF1 17556 82 + 1
-------CGCUAAGCAAAACAGCUGAUCGACU----UCACUGC------CGACGCCACAAAGCUGGCAACACUUUCGACAGGCGCGCAGGAAAUACCGA
-------((...(((......)))...))..(----((.((((------.(.((((.(((((.((....)))))).)...))))))))))))....... ( -20.90)
>DroEre_CAF1 18533 99 + 1
UUUCCCUGGCUUUUCCGAACAGCUGUUCGACCGCUGCCGCUGCCGGCGUCGACGCCAGAAAGCUGGCAACACUUUCGACAGGCGCGCAGGAAAAGCCGA
......((((((((((((((....)))))....((((.((.(((((((....)))).(((((.((....)))))))....)))))))))))))))))). ( -46.50)
>DroYak_CAF1 16669 99 + 1
UUUCCCUGGCUUUUCCGAACAGCUGGUCGACCGCUGUCGCUGCCGGCGUCGACGCCAGAAAGCUGGCAACACUUUCGACAGGCGCGCAGGAAAAGCCGA
......((((((((((((.((((.((....))))))))((((((((((....)))).(((((.((....)))))))....)))).)).)))))))))). ( -49.40)
>DroAna_CAF1 16397 86 + 1
-------------GCCGACCAGCUGAUCGGUCGCAGUCGCUGUCGGCGUCGGCGCCAGAAAGCUGGCAACACUUUCGACAGGCGCUCAGGAAAAGCCGA
-------------((((((.(((.(((.(....).))))))))))))...((((((.(((((.((....)))))))....))))))..((.....)).. ( -35.60)
>DroPer_CAF1 17526 82 + 1
-------CGCUAAGCAAAACAGCUGAUCGACU----CCACUGC------CGACGCCACAAAGCUGGCAACACUUUCGACAGGCGCGCAGGAAAUACCGA
-------((...(((......)))...))...----...((((------.(.((((.(((((.((....)))))).)...))))))))).......... ( -19.50)
>consensus
_______GGCUUUGCCGAACAGCUGAUCGACCGCUGUCGCUGCCGGCGUCGACGCCAGAAAGCUGGCAACACUUUCGACAGGCGCGCAGGAAAAGCCGA
......................(((.((((.(((((.......)))))))))((((.(((((.((....)))))))....))))..))).......... (-17.29 = -18.60 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:37 2006