Locus 7619

Sequence ID	3L_DroMel_CAF1
Location	20,510,441 – 20,510,547
Length	106
Max. P	0.923829

overview

Window 3

Location	20,510,441 – 20,510,547
Length	106
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	74.22
Mean single sequence MFE	-27.60
Consensus MFE	-18.35
Energy contribution	-18.73
Covariance contribution	0.37
Combinations/Pair	1.06
Mean z-score	-1.81
Structure conservation index	0.66
SVM decision value	1.16
SVM RNA-class probability	0.923829
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20510441 106 + 23771897
GGGCUUUCGGUCUUAAUGGAUCGACAUUGAGGUGCGCACGCACUGGGAGAAAUAUU------CCUUAGGAGUCGCACUUAAU--UUGAUAAGCUUUAUGAUCCAACAAAACCCA
(((...(((((((....)))))))((...(((((((.((...(((((.((.....)------))))))..)))))))))...--.)).......................))). ( -29.40)
>DroSec_CAF1 53149 92 + 1
GGGCUUUCGGUCUUAAUGGAUCGACAUUGAGGUGCGCACGCACUGGGAGAAAUAUUCCUAUUCCUUAGAAGUCGCCCUUAAU--UUGAU------------CCAA--------A
((((.....))))...((((((((.(((((((.(((.((...(((((.(((.........))))))))..))))))))))))--)))))------------))).--------. ( -30.60)
>DroSim_CAF1 53425 86 + 1
GGGCUUUCGGUCUUAAUGGAUCGACAUUGAGGUGCGCACGCACUGGGAGAAAUAUU------GUUUAGAAGUCGCCCUUAAU--UUGAU------------CCAA--------A
((((.....))))...((((((((.(((((((.(((.((...(((((.((....))------.)))))..))))))))))))--)))))------------))).--------. ( -26.60)
>DroEre_CAF1 55615 104 + 1
GGGCUUUCGGUCUUAAUGGAUCGACAUUGAGGUGCGCACGCACUUGGAGAAUAUUU------CCCUAC--GUC-CUCUUAACAAUUAAACAACUCUAAGAUCUAAGAAAAACC-
((((..(((((((....))))))).....((((((....))))))(((((...)))------))....--)))-)(((((....(((........)))....)))))......- ( -23.80)
>consensus
GGGCUUUCGGUCUUAAUGGAUCGACAUUGAGGUGCGCACGCACUGGGAGAAAUAUU______CCUUAGAAGUCGCCCUUAAU__UUGAU____________CCAA________A
((((..(((((((....)))))))..((..(((((....)))))..)).........................))))..................................... (-18.35 = -18.73 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:51 2006