Locus 7618

Sequence ID 3L_DroMel_CAF1
Location 20,503,059 – 20,503,152
Length 93
Max. P 0.609014
window12382

overview

Window 2

Location 20,503,059 – 20,503,152
Length 93
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 78.78
Mean single sequence MFE -25.10
Consensus MFE -16.18
Energy contribution -17.23
Covariance contribution 1.06
Combinations/Pair 1.10
Mean z-score -1.37
Structure conservation index 0.64
SVM decision value 0.15
SVM RNA-class probability 0.609014
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20503059 93 - 23771897
-----------AGCCCGCAGCGCGAAAAAGCAAAAGGAAUUCAAGGCUAAGAGUCUGAGAAUCGGAGGCAGGCAUUGAAUUUCAUGAGUUCUAUCUU----CGGCUUA
-----------((((......((......))....(((((((((.(((..(..((((.....))))..).))).)))))))))..............----.)))).. ( -23.70)
>DroVir_CAF1 54815 89 - 1
UUGUUGUCUGUGGCCCGCAGCUA--------AAAAGGAAUUCAAGGCGAUGCUUGUGUUACUUAAA-----GCAUCGAAUUUCAUGAGUUUUGUC------CGGCAAA
((((((.(((((...)))))...--------....((((((((.((((((((((..........))-----))))))....)).))))))))...------)))))). ( -22.20)
>DroSec_CAF1 45722 93 - 1
-----------AGCCCGCAGCGCGAAAAAGCAAAAGGAAUUCAAGGCUAAGAGUCUGAGAAUCGGAGGCAGGCAUUGAAUUUCAUGAGUUCUAUCUG----CGGCUUA
-----------((((.((((.((......))....(((((((((.(((..(..((((.....))))..).))).)))))))))...........)))----))))).. ( -29.30)
>DroSim_CAF1 45588 93 - 1
-----------AGCCCGCAGCGCGAAAAAGCAAAAGGAAUUCAAGGCUAAGAGUCUGAGAAUCGGAGGCAGGCAUUGAAUUUCAUGAGUUCUAUCUG----CGGCUUA
-----------((((.((((.((......))....(((((((((.(((..(..((((.....))))..).))).)))))))))...........)))----))))).. ( -29.30)
>DroEre_CAF1 47915 91 - 1
-----------AGCCCGCAGCGCGAA-AAGCAAAAGGAAUUCAAGGCUAAGAGUCUGAGAAUCGGAGGCAGGCAUUGAAUUUCAUGAGUUCU-UAUU----CGGCUUA
-----------((((......((...-..))....(((((((((.(((..(..((((.....))))..).))).)))))))))..((((...-.)))----))))).. ( -24.40)
>DroAna_CAF1 44110 98 - 1
A--G-------AGCCCGCAGCACGAA-AAGCAAAAGGAAUUCAAGGCUGAAAGUCUGUGAAUCGGAGGCAGGCAUUGAAUUUCAUGAGUUCUUUUUCUUACCCAGUUA
(--(-------(((.((..((.....-..))....((((((((((.(((....((((.....))))..))).).))))))))).)).)))))................ ( -21.70)
>consensus
___________AGCCCGCAGCGCGAA_AAGCAAAAGGAAUUCAAGGCUAAGAGUCUGAGAAUCGGAGGCAGGCAUUGAAUUUCAUGAGUUCUAUCUG____CGGCUUA
............(((....((........))....(((((((((.(((.....((((.....))))....))).)))))))))...................)))... (-16.18 = -17.23 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:50 2006