Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,493,149 – 20,493,255 |
Length | 106 |
Max. P | 0.742826 |
Location | 20,493,149 – 20,493,255 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 83.61 |
Mean single sequence MFE | -24.02 |
Consensus MFE | -15.12 |
Energy contribution | -15.25 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.12 |
Mean z-score | -1.92 |
Structure conservation index | 0.63 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.665783 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20493149 106 + 23771897 UGCCACGCUUUCAACUACUCAGUGCGACAUGCACCGAGAGAAACUCAGUGUGUUAAAGAAAUUACCAAAAAAAAAGUUAAAACAAACUGGCUA------------AAUGUAUUGGCUA ...((((((.....((.(((.((((.....)))).)))))......))))))......................((((......))))(((((------------(.....)))))). ( -20.80) >DroSec_CAF1 35701 106 + 1 UGCCACGCUUUCAACUACUCAGUGCGGCAUGCACCGAGAGAAACUUGGGGUAUUAAAGAAAUUACCAAAAAAAAAGGUAAAACAAACUGGCUA------------AAUAUAUUGGCUA .(((.((((...........)))).)))((((.(((((.....))))).))))........(((((.........))))).......((((((------------(.....))))))) ( -24.20) >DroSim_CAF1 35656 104 + 1 UGCCACGCUUUCAACUACUCAGUGCGGCAUGCACCGAGAGAAACUUGGGGUAUUAAAUAAAUUACCAAAA--AAAGGUAAAACAAACUGGCUA------------AAUAUAUUGGCUA .(((.((((...........)))).)))((((.(((((.....))))).))))........(((((....--...))))).......((((((------------(.....))))))) ( -24.70) >DroEre_CAF1 37584 117 + 1 UGCCACGCUUUCAACUACUCAGUGUGGCAUGCACAGAGAGAAUAUUAUGGCAUUAAAUAAAUUACCUCAA-AAAAGUGAAAACAAACUGGCUUUGGGAACAGCAUAGUGUAUUGCAUA .((((((((...........))))))))(((((..(((..(((.((((........)))))))..)))..-....((....))..(((((((..(....)))).))))....))))). ( -26.40) >consensus UGCCACGCUUUCAACUACUCAGUGCGGCAUGCACCGAGAGAAACUUAGGGUAUUAAAGAAAUUACCAAAA_AAAAGGUAAAACAAACUGGCUA____________AAUAUAUUGGCUA .((((.........((.(((.((((.....)))).)))))........((((..........)))).....................))))........................... (-15.12 = -15.25 + 0.13)
Location | 20,493,149 – 20,493,255 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 83.61 |
Mean single sequence MFE | -25.82 |
Consensus MFE | -19.11 |
Energy contribution | -19.92 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.05 |
Mean z-score | -1.75 |
Structure conservation index | 0.74 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.742826 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20493149 106 - 23771897 UAGCCAAUACAUU------------UAGCCAGUUUGUUUUAACUUUUUUUUUGGUAAUUUCUUUAACACACUGAGUUUCUCUCGGUGCAUGUCGCACUGAGUAGUUGAAAGCGUGGCA ..((((...(.((------------((((((((.((((..........................)))).)))).......((((((((.....))))))))..)))))).)..)))). ( -27.27) >DroSec_CAF1 35701 106 - 1 UAGCCAAUAUAUU------------UAGCCAGUUUGUUUUACCUUUUUUUUUGGUAAUUUCUUUAAUACCCCAAGUUUCUCUCGGUGCAUGCCGCACUGAGUAGUUGAAAGCGUGGCA .............------------..((((((((...(((((.........)))))..............(((.(....((((((((.....)))))))).).))).)))).)))). ( -26.30) >DroSim_CAF1 35656 104 - 1 UAGCCAAUAUAUU------------UAGCCAGUUUGUUUUACCUUU--UUUUGGUAAUUUAUUUAAUACCCCAAGUUUCUCUCGGUGCAUGCCGCACUGAGUAGUUGAAAGCGUGGCA ..((((.....((------------((((.....((..(((((...--....)))))..))...................((((((((.....))))))))..))))))....)))). ( -27.00) >DroEre_CAF1 37584 117 - 1 UAUGCAAUACACUAUGCUGUUCCCAAAGCCAGUUUGUUUUCACUUUU-UUGAGGUAAUUUAUUUAAUGCCAUAAUAUUCUCUCUGUGCAUGCCACACUGAGUAGUUGAAAGCGUGGCA ...(((........)))..........((((...((((((((((...-....((((..........))))........(((..((((.....))))..))).)).)))))))))))). ( -22.70) >consensus UAGCCAAUACAUU____________UAGCCAGUUUGUUUUAACUUUU_UUUUGGUAAUUUAUUUAAUACCCCAAGUUUCUCUCGGUGCAUGCCGCACUGAGUAGUUGAAAGCGUGGCA ...........................((((((((.................((((..........))))........((((((((((.....)))))))).))....)))).)))). (-19.11 = -19.92 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:46 2006