| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,487,505 – 20,487,606 |
| Length | 101 |
| Max. P | 0.836413 |
| Location | 20,487,505 – 20,487,606 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 79.82 |
| Mean single sequence MFE | -28.41 |
| Consensus MFE | -20.46 |
| Energy contribution | -20.43 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.836413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20487505 101 + 23771897 UU-UGGGUG--AU-----GGUGGUU--------GGUCUUGGGCCUCU-UUGAUAAAUGUGCAACAUUUAGACGCGAUUUGGGGCCAAGAUAAGACCGAUUUUGUAAAAGAAUUGCGUG ..-...(..--((-----...((((--------(((((((((((((.-(((.((((((.....))))))....)))...))))))....)))))))))))..........))..)... ( -28.82) >DroPse_CAF1 35316 98 + 1 UUUCGGGUCUGUCGGCCUGUCUGUU--------UCUUUUGGGCCUCUUUUGAUAAAUGUGCAACAUUUAGACGCGAUUUGGGGCCAAGAUAAGAGCG------------AAUUGCGUG ...((((((....))))))(((...--------((((...((((((..(((.((((((.....))))))....)))...))))))))))..)))(((------------.....))). ( -28.70) >DroSec_CAF1 30104 101 + 1 UU-UGGGUG--AU-----GGUGGUU--------GGUCUUGGGCCUCU-UUGAUAAAUGUGCAACAUUUAGACGCGAUUUGGGGCCAAGAUAAGACCGAUUUUGUAAAAGAAUUGCGUG ..-...(..--((-----...((((--------(((((((((((((.-(((.((((((.....))))))....)))...))))))....)))))))))))..........))..)... ( -28.82) >DroSim_CAF1 30033 102 + 1 UU-UGGGUG--AU----NGGUGGUU--------GGUCUUGGGCCUCU-UUGAUAAAUGUGCAACAUUUAGACGCGAUUUGGGGCCAAGAUAAGACCGAUUUUGUAAAAGAAUUGCGUG ..-...(..--((----....((((--------(((((((((((((.-(((.((((((.....))))))....)))...))))))....)))))))))))..........))..)... ( -28.34) >DroEre_CAF1 32024 109 + 1 UU-UGGGUG--AU-----GGUGGUGAAGACCAACGUCUUGGGACUCU-UUGAUAAAUGUGCAACAUUUAGACGCGAUUUGGGGCCAAGAUAAUACGGAUUUUGUAAAAGAAUUGCGUG ..-.(((((--((-----(.((((....)))).)))).....)))).-....((((((.....)))))).(((((((((.....((((((.......)))))).....))))))))). ( -25.70) >DroAna_CAF1 28650 86 + 1 UUUCGGGUG--AU-----GGUA--U--------AGUCUUGGGCCUUU-UUGAUAAAUGUGCAACAUUUAGACGCGAUUUGGGGCCAAGAUAAGACC--------------ACAGUCUG ....((.((--.(-----(((.--.--------.(((((((.(((..-(((.((((((.....))))))....)))...))).)))))))...)))--------------))).)).. ( -30.10) >consensus UU_UGGGUG__AU_____GGUGGUU________GGUCUUGGGCCUCU_UUGAUAAAUGUGCAACAUUUAGACGCGAUUUGGGGCCAAGAUAAGACCGAUUUUGUAAAAGAAUUGCGUG .................................(((((((((((((..(((.((((((.....))))))....)))...))))))....)))))))...................... (-20.46 = -20.43 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:40 2006