Locus 7612

Sequence ID 3L_DroMel_CAF1
Location 20,485,806 – 20,485,896
Length 90
Max. P 0.695223
window12370

overview

Window 0

Location 20,485,806 – 20,485,896
Length 90
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 74.00
Mean single sequence MFE -19.70
Consensus MFE -13.82
Energy contribution -14.46
Covariance contribution 0.64
Combinations/Pair 1.07
Mean z-score -1.26
Structure conservation index 0.70
SVM decision value 0.34
SVM RNA-class probability 0.695223
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20485806 90 - 23771897
------------UUUUAUAUGCAUUUUGAUU--UUUUUUCAGUGCAGC--------CCGUGUUCCUUAUCAGUUGGCUUGCAUCUGCUGGCUGAUGCAGGGUUUUAUUAAUC
------------.......(((((..(((..--.....))))))))((--------((.(((.....((((((..((........))..))))))))))))).......... ( -25.90)
>DroSec_CAF1 28506 92 - 1
------------GUUUUUCAAAAUGUUUAUUAUUUCUUCCAGUGCAGC--------CCAAGUUCCUUAUCAGUUGACUUGCAUCUGCUGGCUGAUGCAGGGUUUUAUUAAUC
------------............................((((.(((--------(((((((.((....))..)))))(((((........))))).))))).)))).... ( -16.50)
>DroSim_CAF1 28329 92 - 1
------------GUUUUUCAAUAUGUUUAUUAUUUUUUCCAGUGCAGC--------CCAAGUUCCUUAUCAGUUGGCUUGCAUCUGCUGGCUGAUGCAGGGUUUUAUUAAUC
------------............................((((.(((--------(((((...)))((((((..((........))..))))))...))))).)))).... ( -20.50)
>DroEre_CAF1 30256 91 - 1
------------GCAUUUCAAAAUGCCUAUGUUUUUUCCCAGUGCAGC--------ACAAGUUCCUUAUCAGUUCGCUUGCAUCUGCCGGC-GAUGCAGGGCUUUAUUAAUC
------------(((((....)))))...........(((.(((...)--------)).............(((((((.((....)).)))-)).)).)))........... ( -17.90)
>DroAna_CAF1 26715 110 - 1
CUUCGAAAAACUUCUUAUUACCUUA--UAGAUUUUCUUUCAGUGUAAACUUAACCACCGCAUUCCUUAUCAGUUGCCUUGCAUCUGUUGGCUGGUGCAGGGUUUUAUUAAUC
.................((((((..--.((.....))...)).))))...........................((((((((((........)))))))))).......... ( -17.70)
>consensus
____________GUUUUUCAAAAUGUUUAUUAUUUUUUCCAGUGCAGC________CCAAGUUCCUUAUCAGUUGGCUUGCAUCUGCUGGCUGAUGCAGGGUUUUAUUAAUC
..............................................................(((((((((((((((........))))))))))).))))........... (-13.82 = -14.46 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:39 2006