| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,481,262 – 20,481,357 |
| Length | 95 |
| Max. P | 0.572950 |
| Location | 20,481,262 – 20,481,357 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 94.74 |
| Mean single sequence MFE | -25.61 |
| Consensus MFE | -24.27 |
| Energy contribution | -24.60 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20481262 95 - 23771897 ACAAGGCUGGUCGAGGACAAAAAAGCAGAUCUUCGGCCCAAAAUAAUAAAAACAUGUGAAAUAUGUUCGGGCAGCGAUACGAUGCGCCUAUGCCG ....(((.((((((((((.........).)))))))))............(((((((...))))))).((((.(((......)))))))..))). ( -25.80) >DroSec_CAF1 24060 95 - 1 ACAAGGCUGGUCGAGGACAAAAAGGCAGAUCUUCGGCCCAAAAUAAUAAAAACAUGUGAAAUAUGUUCGGGCAGCGAUACGAUGCGCCUAUGCCG ....(((.((((((((((.........).)))))))))............(((((((...))))))).((((.(((......)))))))..))). ( -25.80) >DroEre_CAF1 25857 94 - 1 GCGCGGCUGGUCGAGGACAAAAA-GAAGAUCUUCGCCCCAAAAUAAUAAAAACAUGUGAAAUAUGUUCGGGCAGCGCUACGAUGCGCCUAUGCCG ...(((((((..((((((.....-...).)))))((((............(((((((...))))))).)))).((((......))))))).)))) ( -25.22) >consensus ACAAGGCUGGUCGAGGACAAAAA_GCAGAUCUUCGGCCCAAAAUAAUAAAAACAUGUGAAAUAUGUUCGGGCAGCGAUACGAUGCGCCUAUGCCG ....(((.((((((((((.........).)))))))))............(((((((...))))))).((((.(((......)))))))..))). (-24.27 = -24.60 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:33 2006