| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,476,650 – 20,476,757 |
| Length | 107 |
| Max. P | 0.637000 |
| Location | 20,476,650 – 20,476,757 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 83.57 |
| Mean single sequence MFE | -22.89 |
| Consensus MFE | -14.74 |
| Energy contribution | -16.05 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.637000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20476650 107 - 23771897 AGGAGCAAUCUUUCAGUUGUGGCGUUGCACUCGCCACAAAAAAUGUCCUAUAAAGUAGGCAAUCGCCGACAAAAAUCCAACCUCCUGACCCCCACAAUCACACUUUA (((((...........((((((((.......))))))))....((((((....))..(((....)))))))..........)))))..................... ( -24.90) >DroSec_CAF1 19565 106 - 1 AGGAGCAAUCUUUCAGUUGUGGCGUUGCACUCGCCACAAAAAAUGUCCUAUAAAGUGGGAAAUGGCCGAACAA-AACCAACCUCUUGACCCCCAAAAACACACUUUA ((((.((...(((...((((((((.......)))))))).))))))))).(((((((((...((......)).-..))......(((.....))).....))))))) ( -22.30) >DroSim_CAF1 19469 106 - 1 AGGAGCAAUCUUUCAGUUGUGGCGUUGCACUCGCCACAAAAAAUGUCCUAUAAAGUGUGAAAUCACCGAACAA-AACCAACCUCUUGACCCCCACAAACACACUUUA ((((.((...(((...((((((((.......)))))))).))))))))).(((((((((...........(((-..........)))...........))))))))) ( -22.35) >DroEre_CAF1 21609 100 - 1 AGGAGCAG-CUUUCAG---UGGCGAUGCACUCGCCACAA-AAAUGUCCUAUGAAGUAGUCGGCGACUGACCAA-CCACAACCUCUUGAAC-UUACGACCACACUUUA ((((.((.-.(((..(---((((((.....)))))))))-)..)))))).((((((.((.((((..((.....-.))(((....)))...-...)).)))))))))) ( -22.00) >consensus AGGAGCAAUCUUUCAGUUGUGGCGUUGCACUCGCCACAAAAAAUGUCCUAUAAAGUAGGAAAUCACCGAACAA_AACCAACCUCUUGACCCCCACAAACACACUUUA (((((...........((((((((.......))))))))......((((((...)))))).....................)))))..................... (-14.74 = -16.05 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:33 2006